Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_G03
         (637 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    31   0.18 
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    29   0.43 
SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    27   2.3  
SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-phosphat...    25   6.9  
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c...    25   6.9  

>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1260

 Score = 30.7 bits (66), Expect = 0.18
 Identities = 20/85 (23%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
 Frame = +1

Query: 325 VLEXEIATLRTVLQSKIRQSSDLKRKLGI-TVWKEITEDVNQGLKNVKESQVYQKTESVI 501
           VLE + +    ++Q    +   +++KL    +++++ E  N+G +++  S ++  T  + 
Sbjct: 140 VLENQFSKTAGIVQGITGEFLRVEKKLDEEALYQDLKELYNEGFRSISVSLMHSYTYPLH 199

Query: 502 KTTAEKTSSIIGGITAGVSSKLGQM 576
           +   EK +  IG     +SSKL  M
Sbjct: 200 EEVVEKIAKRIGFTDISLSSKLTPM 224


>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 29.5 bits (63), Expect = 0.43
 Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
 Frame = +1

Query: 340 IATLRTVLQSKIRQSSDLKRKLGITVWKEITEDVNQGLKNV---KESQVYQKTESVIKTT 510
           + +L T+L   +R +SDL  + G+    +I + +N  ++N     ES  +  + SVIK  
Sbjct: 176 VVSLVTILVPPMRMASDLVGQSGLDHLNKIMQSLNFSVENFFPSDESVSFSSSSSVIKRM 235

Query: 511 AEKTSSII 534
            ++  S++
Sbjct: 236 FKEHESVL 243


>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 707

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 8/20 (40%), Positives = 17/20 (85%)
 Frame = +2

Query: 17  YTYLP*LDYWSQLFTKSAWL 76
           ++Y+  LD+W++L +++AWL
Sbjct: 431 WSYVHSLDFWARLLSQAAWL 450


>SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-
           phosphatidyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 14/57 (24%), Positives = 26/57 (45%)
 Frame = +3

Query: 3   RYQNFIPTYHNSTIGHNFSLKVLGLLVCYIHKSFVFYYFSKEI*A*YFSFISHRKSF 173
           ++QN   TYH     ++ S  ++ +      KS++F  F+  I   + S   H+  F
Sbjct: 406 QWQNKGNTYHAKGKHYSLSFSIINIFWSTALKSYIFEKFTNTILGFWLSTQHHKHPF 462


>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
           catalytic subunit|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1018

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 466 ESQVYQKTESVIKTTAEKTSSIIGGITAGVSSK 564
           ES V+ K E++ +  + +T  +  GIT  +SSK
Sbjct: 806 ESFVFNKLEAMAQLPSPRTPVLDAGITQALSSK 838


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,377,921
Number of Sequences: 5004
Number of extensions: 45041
Number of successful extensions: 135
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)