Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_G03
         (637 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_05_0015 - 20083143-20083308,20083645-20084017,20084362-200846...    29   4.1  
02_05_0437 - 28986459-28986524,28986606-28986731,28986842-289869...    29   4.1  
04_03_0745 + 19244089-19244521,19244638-19244723,19245090-192452...    27   9.4  
03_05_0229 - 22142255-22142344,22142471-22142527,22142621-221427...    27   9.4  
02_01_0286 + 1921049-1921726                                           27   9.4  

>09_05_0015 -
           20083143-20083308,20083645-20084017,20084362-20084675,
           20085164-20085512,20085678-20085837,20086307-20086618,
           20086700-20086820,20087225-20087277
          Length = 615

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = -3

Query: 512 AVVFITDSVFWYTWLSLTFFKP*LTSSVI-SFHTVMPSLRFKSEL*RILLCSTVL 351
           AV  +  SV++  W + ++F+P L SSV+     VM ++ F      ILL   VL
Sbjct: 276 AVAQVFSSVYFSAWSNRSYFRPLLFSSVVLLLGNVMYAMAFDLGSLTILLLGRVL 330


>02_05_0437 -
           28986459-28986524,28986606-28986731,28986842-28986941,
           28987583-28987660,28987857-28987937,28989488-28989624,
           28989693-28989743,28989785-28989878,28990091-28990260
          Length = 300

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/68 (22%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
 Frame = +1

Query: 328 LEXEIATLRTVLQSKIRQSSDLKRKLG-ITVWKEITEDVNQGLKNVKESQVYQKTESVIK 504
           L+ EI     +++ + +   D+++++G +T    ITE+++  ++N   +    KTE    
Sbjct: 210 LDNEIVFNEAIIEEREQAIQDIQQQIGELTRTSFITEEIDTNIENSAAATKEAKTELAKA 269

Query: 505 TTAEKTSS 528
           +  +K++S
Sbjct: 270 SKTQKSNS 277


>04_03_0745 +
           19244089-19244521,19244638-19244723,19245090-19245221,
           19245335-19245499,19245602-19245892
          Length = 368

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +3

Query: 531 HRRHHGR-RVQQARSDAQLGVFPLHRRTR 614
           H   HG   V Q   DAQ+GVFP+ R  R
Sbjct: 257 HLSSHGAMEVDQDTRDAQVGVFPVERGER 285


>03_05_0229 - 22142255-22142344,22142471-22142527,22142621-22142705,
            22143552-22143677,22143750-22143793,22143877-22143999,
            22144078-22144216,22148795-22151292
          Length = 1053

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 388  DLKRKLGITVWKEITEDVNQGLKNVKE 468
            D  RK+GI   +E+ +D N+G+  VKE
Sbjct: 982  DAARKVGIEGAEELLQDSNKGVDEVKE 1008


>02_01_0286 + 1921049-1921726
          Length = 225

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +3

Query: 510 RREDVFDHRRHHGRRVQQARSDAQLGVFPLHRRTR 614
           RR+D    RRH G      R +   G FP+ RR R
Sbjct: 90  RRDDRGSWRRHSGGNAIGLRQERASGGFPVKRRRR 124


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,716,258
Number of Sequences: 37544
Number of extensions: 265805
Number of successful extensions: 734
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)