Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_G01
         (596 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   2.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   5.3  
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    21   9.2  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    21   9.2  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    21   9.2  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    21   9.2  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    21   9.2  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   9.2  
AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.           21   9.2  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = +2

Query: 143 TDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAY 259
           TD   RK ++ +++ K ++    ++V + N+D    +AY
Sbjct: 288 TDTLIRKYIIPKEQVKEDSLYTNIVVDIRNEDCGSAIAY 326


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = -1

Query: 380  VLIADQLNMLQHNLSDQPSHHNVATHVNKQRTQ 282
            V+   +   L   +S    HHNV  H    RTQ
Sbjct: 1661 VISDSESGRLDTEMSTWGYHHNVNKHCTIHRTQ 1693


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +2

Query: 143 TDYYARKRLVVQDKNKYNTPKYRLIVRLSNK 235
           + +Y+R+R   +D+N+    K R   +L N+
Sbjct: 228 SSHYSRERSCSRDRNREYRKKDRRYEKLHNE 258


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +2

Query: 143 TDYYARKRLVVQDKNKYNTPKYRLIVRLSNK 235
           + +Y+R+R   +D+N+    K R   +L N+
Sbjct: 228 SSHYSRERSCSRDRNREYRKKDRRYEKLHNE 258


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +2

Query: 143 TDYYARKRLVVQDKNKYNTPKYRLIVRLSNK 235
           + +Y+R+R   +D+N+    K R   +L N+
Sbjct: 228 SSHYSRERSCSRDRNREYRKKDRRYEKLHNE 258


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +2

Query: 143 TDYYARKRLVVQDKNKYNTPKYRLIVRLSNK 235
           + +Y+R+R   +D+N+    K R   +L N+
Sbjct: 228 SSHYSRERSCSRDRNREYRKKDRRYEKLHNE 258


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +2

Query: 143 TDYYARKRLVVQDKNKYNTPKYRLIVRLSNK 235
           + +Y+R+R   +D+N+    K R   +L N+
Sbjct: 217 SSHYSRERSCSRDRNREYRKKDRRYEKLHNE 247


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +2

Query: 143 TDYYARKRLVVQDKNKYNTPKYRLIVRLSNK 235
           + +Y+R+R   +D+N+    K R   +L N+
Sbjct: 228 SSHYSRERSCSRDRNREYKEKDRRYEKLHNE 258


>AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.
          Length = 57

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +2

Query: 230 NKDVTCQVAYSRIEXDHIVCAAYSHELPRYG 322
           ++ VTC +   + + +   CAA  H L + G
Sbjct: 16  HRRVTCDLLSFKGQVNDSACAANCHSLGKAG 46


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,312
Number of Sequences: 438
Number of extensions: 3285
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)