Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_F23
         (649 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0862 + 21979932-21980057,21982221-21982289,21982394-21982603     29   2.4  
09_06_0268 + 21942591-21942690,21942821-21942904,21943116-219431...    28   5.6  
07_03_1772 + 29411874-29413218,29413355-29413421,29413749-294138...    28   7.4  

>08_02_0862 + 21979932-21980057,21982221-21982289,21982394-21982603
          Length = 134

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = +1

Query: 16  RQLAGRYLVLNDFNYLAQKLYKMGCKLC 99
           R +  RY V +DFN++++  +++ C +C
Sbjct: 58  RMIPSRYQVSDDFNHVSRDTHEVSCDIC 85


>09_06_0268 +
           21942591-21942690,21942821-21942904,21943116-21943192,
           21943266-21943336,21943646-21943717,21943894-21943965,
           21944057-21944122,21944411-21944476,21944553-21944770,
           21944983-21945254,21945513-21945778,21945879-21945999,
           21946094-21946230,21946362-21946518,21947055-21947189
          Length = 637

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +3

Query: 504 LTIYVNIASYILLNLLKHHHRQPVSLH 584
           + I V +A+ ILL++L+ +H  PVS H
Sbjct: 243 MVIAVLLAALILLSVLRRNHSSPVSSH 269


>07_03_1772 +
           29411874-29413218,29413355-29413421,29413749-29413896,
           29415293-29415416,29416340-29416590,29416923-29418449,
           29418786-29418896,29419576-29419734,29419827-29421734
          Length = 1879

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = +2

Query: 449 QKQVAICNYVCN*XVFLSIDNIRKHS*LHITQPIKTSSSSACISPLLDVNLSH 607
           +K V   N+     V   +D + +H+ +  TQ  +  SSS+  SPLL + +++
Sbjct: 500 EKPVTTRNHAYAEVVVFVLDQMTRHTQVTSTQRKQARSSSSSASPLLSLRITY 552


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,279,049
Number of Sequences: 37544
Number of extensions: 302324
Number of successful extensions: 734
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)