Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_F23
         (649 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38258| Best HMM Match : Sec7 (HMM E-Value=5.1e-22)                  29   2.5  
SB_23904| Best HMM Match : RdRP (HMM E-Value=0)                        29   2.5  
SB_53416| Best HMM Match : Acetyltransf_1 (HMM E-Value=2.7e-21)        28   5.7  
SB_51927| Best HMM Match : Acetyltransf_1 (HMM E-Value=2.7e-21)        28   5.7  
SB_44780| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-34)                 28   7.5  
SB_32117| Best HMM Match : DUF1143 (HMM E-Value=7.7)                   27   9.9  

>SB_38258| Best HMM Match : Sec7 (HMM E-Value=5.1e-22)
          Length = 237

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 19/74 (25%), Positives = 32/74 (43%)
 Frame = +3

Query: 414 IPFHYKIVFSFARNRLLYVIMSVIXLCFYQLTIYVNIASYILLNLLKHHHRQPVSLHCWM 593
           +P  Y I+       ++ +I+ +I +    + I ++   Y   +LL HHH      H W 
Sbjct: 134 MPCDYTIIIIIIIITIIIIIIIIIIIIIITIVIAIHHHHYYHHHLLHHHH------HHWH 187

Query: 594 *TSPIVRHIERSST 635
               I+RH   S T
Sbjct: 188 HHHLIIRHHHHSFT 201


>SB_23904| Best HMM Match : RdRP (HMM E-Value=0)
          Length = 1511

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -1

Query: 139  IRSKLGHKATILVHIVCSPFCTIFEXXXXXXXXXXIDQLAVELRTS 2
            ++ K G K TI   + CS FC I E          ++QL  E+ +S
Sbjct: 1042 LQQKTGAKITIRPKVRCSTFCLIVEARGTEFEVDGVEQLLQEITSS 1087


>SB_53416| Best HMM Match : Acetyltransf_1 (HMM E-Value=2.7e-21)
          Length = 209

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 18/67 (26%), Positives = 35/67 (52%)
 Frame = +1

Query: 103 PKLSLCGLVLSVWGIIQLTLMGVFYYIRAVALLEDLPFDEKNPPHSIEXFVIEVEKGYTL 282
           P L L  LV +V  +  L L+G+   + AV +   L F + +  H++E  + ++ K Y++
Sbjct: 43  PALFLTRLVAAVTSV-WLALIGLGLIVSAVYISYYLKFMQ-HINHALETDLADISKSYSV 100

Query: 283 NAQNCWI 303
              + W+
Sbjct: 101 EKSSFWV 107


>SB_51927| Best HMM Match : Acetyltransf_1 (HMM E-Value=2.7e-21)
          Length = 238

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 18/67 (26%), Positives = 35/67 (52%)
 Frame = +1

Query: 103 PKLSLCGLVLSVWGIIQLTLMGVFYYIRAVALLEDLPFDEKNPPHSIEXFVIEVEKGYTL 282
           P L L  LV +V  +  L L+G+   + AV +   L F + +  H++E  + ++ K Y++
Sbjct: 72  PALFLTRLVAAVTSV-WLALIGLGLIVSAVYISYYLKFMQ-HINHALETDLADISKSYSV 129

Query: 283 NAQNCWI 303
              + W+
Sbjct: 130 EKSSFWV 136


>SB_44780| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-34)
          Length = 747

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = +1

Query: 55  NYLAQKLYKMGCKLCGPKLSLCGLVLSVWGIIQLTLMGVFYYIRAVAL 198
           NY+ +  Y  GCKL G  L++    LSV+ ++ +TL   +  + A+ L
Sbjct: 356 NYVRRWQYGAGCKLTG-FLAVFATELSVYTLVLITLERFYAIVYAMQL 402


>SB_32117| Best HMM Match : DUF1143 (HMM E-Value=7.7)
          Length = 755

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 7   SLIRQLAGRYLVLNDFNYLAQKLYKMGCKLCGPKL 111
           +L+ +  G    L DF +  QKL +  CK   P L
Sbjct: 557 ALVHRFLGNIFTLKDFKFAWQKLSREFCKRMSPDL 591


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,197,490
Number of Sequences: 59808
Number of extensions: 356887
Number of successful extensions: 886
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)