Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_F20
         (518 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.02c |p23fy||translationally controlled tumor protein ho...    66   4e-12
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    27   1.7  
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    26   2.9  
SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|...    25   5.1  
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    25   5.1  

>SPAC1F12.02c |p23fy||translationally controlled tumor protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 65.7 bits (153), Expect = 4e-12
 Identities = 39/104 (37%), Positives = 56/104 (53%)
 Frame = +3

Query: 204 DIXIEGFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAFGDXKSYTLYLKDYMXXXXXX 383
           D+ I G NPSAE+A+E  +   E+  ++V + RL  T +F D KSY  Y+K YM      
Sbjct: 42  DVDI-GANPSAEDAEENAEEGTETVNNLVYSFRLSPT-SF-DKKSYMSYIKGYMKAIKAR 98

Query: 384 XXXXAPDQLEXFKTNMNKXMKDXLGRFKELQFFTGESMDCDGXV 515
                P+++  F+ N    +K  L  FK+  F+ GESMD D  V
Sbjct: 99  LQESNPERVPVFEKNAIGFVKKILANFKDYDFYIGESMDPDAMV 142



 Score = 34.3 bits (75), Expect = 0.011
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +2

Query: 113 DEMFSDTYKMKLVDEVIYEVTGXLVTRAQG 202
           DE+ SD Y +K VD+++YE    +VT  QG
Sbjct: 11  DELVSDAYDLKEVDDIVYEADCQMVTVKQG 40


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = -2

Query: 211 WISALCSRHQXTGHFVNNFIDQFHFVGVREHLISQ 107
           W S  CS+   TG   +NFI  F   G     I Q
Sbjct: 216 WFSRRCSKINITGSVFDNFIPSFFSFGTHGDGIKQ 250


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -1

Query: 299 VVQDYVNSALDGRVRALVSLFSRRIKTLDXDISPVL 192
           V++D +NS LDG +  +    S R +T   D+S ++
Sbjct: 341 VLEDQMNSLLDGSLYGICRPLSSRAQTSVLDLSDIV 376


>SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 182

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 63  PPPIHQNEDL*GHYHW 110
           PPP H  E    H+HW
Sbjct: 50  PPPRHHKEHKKSHHHW 65


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 71  NPSK*RSIRTLSLADEMFSDTYKMKLVDE 157
           NP+  +  + +SLA E+ SD  + KL D+
Sbjct: 38  NPNGEKKFKEISLAYEVLSDPQRRKLYDQ 66


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,700,048
Number of Sequences: 5004
Number of extensions: 27223
Number of successful extensions: 59
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)