Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_F18
(544 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein L23|Schizosac... 152 3e-38
SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein L23|Schizosacc... 152 3e-38
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch... 26 3.1
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 26 4.1
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 25 5.5
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 25 9.5
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 25 9.5
SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 9.5
>SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein
L23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 152 bits (369), Expect = 3e-38
Identities = 67/84 (79%), Positives = 77/84 (91%)
Frame = +3
Query: 120 RLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFXRRDGXFIYFEDNAGVIXN 299
RLNRLPAA GDM++ATVKKGKP+LRKK+MPA+V+RQRK + R+DG ++YFEDNAGVI N
Sbjct: 47 RLNRLPAASCGDMVLATVKKGKPDLRKKIMPAIVVRQRKAWRRKDGVYLYFEDNAGVIVN 106
Query: 300 NKGEMKGSAITGPVAKECADLWPR 371
KGEMKGSAITGPVAKECADLWPR
Sbjct: 107 PKGEMKGSAITGPVAKECADLWPR 130
Score = 28.7 bits (61), Expect = 0.59
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = +2
Query: 11 QFRISLGLPAGKQ*STAPTTQGAKNLYVIAVQG 109
++R++LGLP + A + GAKNLY+++V G
Sbjct: 12 KYRMTLGLPVQAIMNCADNS-GAKNLYIVSVFG 43
Score = 25.0 bits (52), Expect = 7.2
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = +1
Query: 43 EAVINCADNTGRK 81
+A++NCADN+G K
Sbjct: 22 QAIMNCADNSGAK 34
>SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein
L23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 139
Score = 152 bits (369), Expect = 3e-38
Identities = 67/84 (79%), Positives = 77/84 (91%)
Frame = +3
Query: 120 RLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFXRRDGXFIYFEDNAGVIXN 299
RLNRLPAA GDM++ATVKKGKP+LRKK+MPA+V+RQRK + R+DG ++YFEDNAGVI N
Sbjct: 47 RLNRLPAASCGDMVLATVKKGKPDLRKKIMPAIVVRQRKAWRRKDGVYLYFEDNAGVIVN 106
Query: 300 NKGEMKGSAITGPVAKECADLWPR 371
KGEMKGSAITGPVAKECADLWPR
Sbjct: 107 PKGEMKGSAITGPVAKECADLWPR 130
Score = 28.7 bits (61), Expect = 0.59
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = +2
Query: 11 QFRISLGLPAGKQ*STAPTTQGAKNLYVIAVQG 109
++R++LGLP + A + GAKNLY+++V G
Sbjct: 12 KYRMTLGLPVQAIMNCADNS-GAKNLYIVSVFG 43
Score = 25.0 bits (52), Expect = 7.2
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = +1
Query: 43 EAVINCADNTGRK 81
+A++NCADN+G K
Sbjct: 22 QAIMNCADNSGAK 34
>SPAC29B12.10c |||OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 851
Score = 26.2 bits (55), Expect = 3.1
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = -2
Query: 105 WTAITYRFFAPCVVGA-VDYCFP 40
WT YRFFA ++G+ V Y FP
Sbjct: 326 WTISRYRFFAYVMIGSFVFYWFP 348
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 25.8 bits (54), Expect = 4.1
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +3
Query: 159 IVATVKKGKPELRKKVMPAVVIRQRKPFXRRDGXFIYFEDNAGV 290
IV KGK L + P++ I R G +Y ED GV
Sbjct: 309 IVVLSSKGKVSLESPMSPSLPIEGTFRSFRVHGATLYLEDTDGV 352
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 25.4 bits (53), Expect = 5.5
Identities = 17/65 (26%), Positives = 27/65 (41%)
Frame = -1
Query: 292 MTPALSSKYINXPSRLXNGFRCLMTTAGITFFRSSGLPFLTVATIMSPEPAAGSLFRRPL 113
+ ALSS+Y S L +T +T SS T +++ +P P + R P
Sbjct: 777 LAKALSSEYTFQKSVLAGLSAATRSTKDLTILLSSSARHYTESSLATPVPLMSPIARVPA 836
Query: 112 IALDS 98
L +
Sbjct: 837 TPLSA 841
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 24.6 bits (51), Expect = 9.5
Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Frame = +1
Query: 322 RPSQGL*PK--NVLICGRVLPQTRAL*LEYTFKI---SNCVSLSFPSTSKSNPKNYNLRN 486
RPSQG PK N L +RAL + T + SN + SNP NY L N
Sbjct: 977 RPSQGSSPKLKNNLSNTEERMGSRALLDDKTDSVITASNSTTSGLSRDESSNPNNYELLN 1036
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 24.6 bits (51), Expect = 9.5
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = -1
Query: 322 EPFISPLLLXMTPALSSKYINXPS 251
+P+ P+L P L Y++ PS
Sbjct: 275 QPYSGPILASTAPTLDGSYLSNPS 298
>SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 350
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +1
Query: 442 PSTSKSNPK-NYNLRNXHLQCKCAKLEYTF 528
P+T+ SN N+ +RN +C+ L TF
Sbjct: 11 PTTATSNSSLNFFVRNREKSIRCSSLHQTF 40
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,060,866
Number of Sequences: 5004
Number of extensions: 38406
Number of successful extensions: 110
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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