Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_F18
(544 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0319 - 16712572-16712654,16712756-16712797,16713955-167142... 159 2e-39
03_01_0276 + 2124538-2124550,2124678-2124962,2126813-2126854,212... 159 2e-39
02_05_1201 + 34929577-34929589,34930252-34930587,34931378-349314... 159 2e-39
12_02_1115 - 26173351-26173725,26174241-26174344,26174812-26174845 56 2e-08
01_01_0098 + 744582-745380,746107-746130,746500-747569 29 2.4
03_06_0296 + 32901696-32901892,32901989-32902232,32903992-329041... 29 3.2
06_03_0458 - 20995834-20996004,20996404-20997309,20997778-209979... 27 7.3
11_06_0434 - 23512921-23513529 27 9.7
03_05_0291 - 22837412-22838128 27 9.7
03_03_0140 + 14771293-14771821,14772343-14772455,14772723-147728... 27 9.7
02_02_0500 - 10993675-10994067,10994434-10995738 27 9.7
>10_08_0319 -
16712572-16712654,16712756-16712797,16713955-16714239,
16714346-16714358
Length = 140
Score = 159 bits (385), Expect = 2e-39
Identities = 70/89 (78%), Positives = 81/89 (91%)
Frame = +3
Query: 105 KAIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFXRRDGXFIYFEDNA 284
K IKGRLNRLP+A GDM++ATVKKGKP+LRKKVMPAV++RQRKP+ R+DG ++YFEDNA
Sbjct: 43 KGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVYMYFEDNA 102
Query: 285 GVIXNNKGEMKGSAITGPVAKECADLWPR 371
GVI N KGEMKGSAITGP+ KECADLWPR
Sbjct: 103 GVIVNPKGEMKGSAITGPIGKECADLWPR 131
Score = 36.3 bits (80), Expect = 0.016
Identities = 18/33 (54%), Positives = 24/33 (72%)
Frame = +2
Query: 11 QFRISLGLPAGKQ*STAPTTQGAKNLYVIAVQG 109
+FR+SLGLP + A T GAKNLY+I+V+G
Sbjct: 13 KFRMSLGLPVAATVNCADNT-GAKNLYIISVKG 44
>03_01_0276 +
2124538-2124550,2124678-2124962,2126813-2126854,
2126943-2127025
Length = 140
Score = 159 bits (385), Expect = 2e-39
Identities = 70/89 (78%), Positives = 81/89 (91%)
Frame = +3
Query: 105 KAIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFXRRDGXFIYFEDNA 284
K IKGRLNRLP+A GDM++ATVKKGKP+LRKKVMPAV++RQRKP+ R+DG ++YFEDNA
Sbjct: 43 KGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVYMYFEDNA 102
Query: 285 GVIXNNKGEMKGSAITGPVAKECADLWPR 371
GVI N KGEMKGSAITGP+ KECADLWPR
Sbjct: 103 GVIVNPKGEMKGSAITGPIGKECADLWPR 131
Score = 36.3 bits (80), Expect = 0.016
Identities = 18/33 (54%), Positives = 24/33 (72%)
Frame = +2
Query: 11 QFRISLGLPAGKQ*STAPTTQGAKNLYVIAVQG 109
+FR+SLGLP + A T GAKNLY+I+V+G
Sbjct: 13 KFRMSLGLPVAATVNCADNT-GAKNLYIISVKG 44
>02_05_1201 +
34929577-34929589,34930252-34930587,34931378-34931419,
34931630-34931712
Length = 157
Score = 159 bits (385), Expect = 2e-39
Identities = 70/89 (78%), Positives = 81/89 (91%)
Frame = +3
Query: 105 KAIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFXRRDGXFIYFEDNA 284
K IKGRLNRLP+A GDM++ATVKKGKP+LRKKVMPAV++RQRKP+ R+DG ++YFEDNA
Sbjct: 60 KGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVYMYFEDNA 119
Query: 285 GVIXNNKGEMKGSAITGPVAKECADLWPR 371
GVI N KGEMKGSAITGP+ KECADLWPR
Sbjct: 120 GVIVNPKGEMKGSAITGPIGKECADLWPR 148
Score = 36.3 bits (80), Expect = 0.016
Identities = 18/33 (54%), Positives = 24/33 (72%)
Frame = +2
Query: 11 QFRISLGLPAGKQ*STAPTTQGAKNLYVIAVQG 109
+FR+SLGLP + A T GAKNLY+I+V+G
Sbjct: 30 KFRMSLGLPVAATVNCADNT-GAKNLYIISVKG 61
>12_02_1115 - 26173351-26173725,26174241-26174344,26174812-26174845
Length = 170
Score = 55.6 bits (128), Expect = 2e-08
Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Frame = +3
Query: 150 GDMIVATVKKGKPELRKK---VMPAVVIRQRKPFXRRDGXFIYFEDNAGVIXNNKGEMKG 320
GD I+ +VK+ +P + K V+ VV+R R DG I F+DNA V+ NNKGE+ G
Sbjct: 84 GDTIIGSVKEAQPRGKVKKGDVVYGVVVRAAMKRGRNDGSEIQFDDNAIVLVNNKGELIG 143
Query: 321 SAITGPVAKE 350
+ + GPV E
Sbjct: 144 TRVFGPVPHE 153
>01_01_0098 + 744582-745380,746107-746130,746500-747569
Length = 630
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -2
Query: 165 PQSCPRNRPPAVCSGDL**PWTAITYRFFAPCVVGAVDY 49
P SC + +CSG T + + F PC V A+DY
Sbjct: 60 PSSCGSSHAKLICSGQD----TILHHPFLGPCKVTAIDY 94
>03_06_0296 +
32901696-32901892,32901989-32902232,32903992-32904112,
32904219-32904406
Length = 249
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -3
Query: 290 DTRIVLKVYKXSITPXERFPLPDDHCRHYLFPEFRFTLFDCGHNHV 153
+ I+++ Y+ T +R P P D + +F F L+DC +N V
Sbjct: 101 EINIIIEAYR---TLRDRGPYPADQVVRDINGKFAFVLYDCSNNSV 143
>06_03_0458 -
20995834-20996004,20996404-20997309,20997778-20997942,
20998024-20998353,20998471-20998527,20998579-20998692,
20999220-20999381,20999465-20999527,21001100-21001207,
21001598-21001675,21001771-21001902
Length = 761
Score = 27.5 bits (58), Expect = 7.3
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +3
Query: 297 NNKGEMKGSAITGPVAKECAD 359
N+KG +GS ITG + + CA+
Sbjct: 725 NDKGSNQGSFITGKIVESCAE 745
>11_06_0434 - 23512921-23513529
Length = 202
Score = 27.1 bits (57), Expect = 9.7
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = +3
Query: 105 KAIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFXRRDGXFIYFEDNA 284
KA+ + AG GD VA +GK L ++ + A++ + KP+ + F +DN
Sbjct: 18 KAVVYEVEAAATAGEGDTPVA---EGKVRLSQESVDAILAEETKPYPNME-YFRSLKDNP 73
Query: 285 GV 290
V
Sbjct: 74 AV 75
>03_05_0291 - 22837412-22838128
Length = 238
Score = 27.1 bits (57), Expect = 9.7
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -1
Query: 385 AFEAIRGHRSAHSLATGPVMAEPFI--SPLLLXMTPALSS 272
+++A+ GH+++H T P MA + P +PA SS
Sbjct: 100 SYQALGGHKTSHRPRTPPTMAAVVVVDEPAATTASPAASS 139
>03_03_0140 +
14771293-14771821,14772343-14772455,14772723-14772830,
14772931-14772973,14773454-14773593,14774216-14774446
Length = 387
Score = 27.1 bits (57), Expect = 9.7
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = -1
Query: 355 AHSLATGPVMAEPFISPLLLXMTPALSSKYINXPSRLXNGFRCLMTTA 212
AH ATGP ++ +TP LSS + + P+R + R L+ A
Sbjct: 76 AHVFATGPGGRPDLARSAVMRVTPGLSS-FADEPARAGDSLRPLIDFA 122
>02_02_0500 - 10993675-10994067,10994434-10995738
Length = 565
Score = 27.1 bits (57), Expect = 9.7
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Frame = -1
Query: 334 PVMAEPFISPLLLXMTPALSSKYINXPSRLXNGFRCLMTT---AGITFFR-SSGLPFLTV 167
P EP I+ + ++PA+ + S + NG+ +M+T G+ F + SSG + V
Sbjct: 225 PAPVEPIIANGKVKLSPAVMEMIYSTISGIENGYLPVMSTEGSGGVYFMKDSSGESNVAV 284
Query: 166 ATIMSPEPAA 137
+ EP A
Sbjct: 285 FKPIDEEPMA 294
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,152,828
Number of Sequences: 37544
Number of extensions: 286735
Number of successful extensions: 713
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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