Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_F18
         (544 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_294| Best HMM Match : Ribosomal_L14 (HMM E-Value=4.1e-23)          103   1e-22
SB_49296| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.3  
SB_45261| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.3  
SB_36982| Best HMM Match : adh_short (HMM E-Value=1.4e-05)             28   4.3  
SB_25243| Best HMM Match : Protamine_P1 (HMM E-Value=5.7)              28   5.7  
SB_38403| Best HMM Match : PP2C (HMM E-Value=8.5e-35)                  27   9.9  

>SB_294| Best HMM Match : Ribosomal_L14 (HMM E-Value=4.1e-23)
          Length = 145

 Score =  103 bits (246), Expect = 1e-22
 Identities = 48/62 (77%), Positives = 54/62 (87%)
 Frame = +3

Query: 105 KAIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFXRRDGXFIYFEDNA 284
           K IKGRLNRLPAA SGDM++ATVKKGKPELRKKVMPAVVIRQRK + R++G F+YFE N 
Sbjct: 62  KGIKGRLNRLPAAASGDMVLATVKKGKPELRKKVMPAVVIRQRKAYRRKNGVFLYFEANI 121

Query: 285 GV 290
            V
Sbjct: 122 KV 123



 Score = 37.9 bits (84), Expect = 0.005
 Identities = 19/33 (57%), Positives = 24/33 (72%)
 Frame = +2

Query: 11  QFRISLGLPAGKQ*STAPTTQGAKNLYVIAVQG 109
           +FRI+LGLP G   + A  T G KNLY+IAV+G
Sbjct: 32  KFRIALGLPVGAVINCADNT-GGKNLYIIAVKG 63



 Score = 27.1 bits (57), Expect = 9.9
 Identities = 11/12 (91%), Positives = 11/12 (91%)
 Frame = +1

Query: 46 AVINCADNTGRK 81
          AVINCADNTG K
Sbjct: 43 AVINCADNTGGK 54


>SB_49296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 966

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 84  FFAPCVVGAVDYCFPAGRPREIRNCA 7
           F  P + GA+D CF  G  + +R+CA
Sbjct: 902 FLNPYLYGALDECFGQGYKKVLRSCA 927


>SB_45261| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 98

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = -3

Query: 332 CDGRALHFALVIXYDTRIVLKVYKXSITPXERFPLPDD 219
           CDG AL   L +  D R V +    S  P  R PLP +
Sbjct: 59  CDGIALLSLLEVLLDIRTVCQTVLPSSVPFIRLPLPSN 96


>SB_36982| Best HMM Match : adh_short (HMM E-Value=1.4e-05)
          Length = 258

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = -3

Query: 179 LFDC-GHNHVPGTGRRQSVQATFDSLGQRSHTDSLRPVLSAQLITASQLGDPGRYG 15
           L +C G  H  G G     + T ++L +   T+S+ P+L A+   A      G YG
Sbjct: 85  LLNCAGMLHPSGKGETSLKEVTAEALRETFSTNSIGPLLMAKHFGAMLANGDGTYG 140


>SB_25243| Best HMM Match : Protamine_P1 (HMM E-Value=5.7)
          Length = 201

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 361 CGRVLPQTRAL*LEYTFKISNCVSL 435
           CGR +P  RA+  +Y  K S C  +
Sbjct: 139 CGRAIPTLRAMRAQYELKASECYDI 163


>SB_38403| Best HMM Match : PP2C (HMM E-Value=8.5e-35)
          Length = 916

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +2

Query: 80  KNLYVIAVQGYQRSPEQTAGGRFRGHDCGHSQKG*T*TPEKGNA 211
           K++YVIA+Q    + E +        + GH   G + T EK NA
Sbjct: 135 KDVYVIALQRANENEEDSGEDSEEEEENGHLMNGDSKTEEKKNA 178


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,192,896
Number of Sequences: 59808
Number of extensions: 325675
Number of successful extensions: 695
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)