Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_F18
         (544 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal prot...   158   2e-39
Z75541-6|CAA99857.2|  644|Caenorhabditis elegans Hypothetical pr...    34   0.058
AF440800-1|AAL28139.1|  644|Caenorhabditis elegans transcription...    34   0.058
Z75541-7|CAI79201.1|  197|Caenorhabditis elegans Hypothetical pr...    32   0.31 
Z99171-7|CAB16312.1|  188|Caenorhabditis elegans Hypothetical pr...    28   3.8  
U55374-4|AAB36866.2|  589|Caenorhabditis elegans Immunoglobulin-...    27   6.6  
U55374-3|ABS19462.1|  591|Caenorhabditis elegans Immunoglobulin-...    27   6.6  

>U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 23 protein.
          Length = 140

 Score =  158 bits (384), Expect = 2e-39
 Identities = 73/87 (83%), Positives = 78/87 (89%)
 Frame = +3

Query: 111 IKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFXRRDGXFIYFEDNAGV 290
           I+GRLNRLP+AG GDM V +VKKGKPELRKKV+  VVIRQRK F R+DG FIYFEDNAGV
Sbjct: 45  IRGRLNRLPSAGVGDMFVCSVKKGKPELRKKVLQGVVIRQRKQFRRKDGTFIYFEDNAGV 104

Query: 291 IXNNKGEMKGSAITGPVAKECADLWPR 371
           I NNKGEMKGSAITGPVAKECADLWPR
Sbjct: 105 IVNNKGEMKGSAITGPVAKECADLWPR 131



 Score = 39.1 bits (87), Expect = 0.002
 Identities = 21/34 (61%), Positives = 25/34 (73%)
 Frame = +2

Query: 8   AQFRISLGLPAGKQ*STAPTTQGAKNLYVIAVQG 109
           A+FRISLGLP G   + A  T GAKNL+VI+V G
Sbjct: 12  AKFRISLGLPVGAVMNCADNT-GAKNLFVISVYG 44


>Z75541-6|CAA99857.2|  644|Caenorhabditis elegans Hypothetical
           protein F52B5.5a protein.
          Length = 644

 Score = 34.3 bits (75), Expect = 0.058
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +1

Query: 397 LEYTFKISNCVSLSFPSTSKSNPKNYNLRNXHL-QCKCAKLEYTFMIR 537
           LE  F ++N  +   PSTS S+P N N R   L +C     +YT M R
Sbjct: 445 LENMFNVTNTTAQMEPSTSYSSPSNSNNRKRFLNECDSPNNDYTMMHR 492


>AF440800-1|AAL28139.1|  644|Caenorhabditis elegans transcription
           factor CEP-1 protein.
          Length = 644

 Score = 34.3 bits (75), Expect = 0.058
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +1

Query: 397 LEYTFKISNCVSLSFPSTSKSNPKNYNLRNXHL-QCKCAKLEYTFMIR 537
           LE  F ++N  +   PSTS S+P N N R   L +C     +YT M R
Sbjct: 445 LENMFNVTNTTAQMEPSTSYSSPSNSNNRKRFLNECDSPNNDYTMMHR 492


>Z75541-7|CAI79201.1|  197|Caenorhabditis elegans Hypothetical
           protein F52B5.5b protein.
          Length = 197

 Score = 31.9 bits (69), Expect = 0.31
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 409 FKISNCVSLSFPSTSKSNPKNYNLRNXHL-QCKCAKLEYTFMIR 537
           F ++N  +   PSTS S+P N N R   L +C     +YT M R
Sbjct: 2   FNVTNTTAQMEPSTSYSSPSNSNNRKRFLNECDSPNNDYTMMHR 45


>Z99171-7|CAB16312.1|  188|Caenorhabditis elegans Hypothetical
           protein F47G4.8 protein.
          Length = 188

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -3

Query: 428 TQLLILNVYSSYRARV*GNTRPQISTFFGYRPCDGRALHFALVI 297
           T LL  ++  S RAR+     P +  F  YRPC  R L +  ++
Sbjct: 80  TTLLGNSIAPSPRARLTSQCSPGLGGFGVYRPCTSRTLPYRQIL 123


>U55374-4|AAB36866.2|  589|Caenorhabditis elegans
           Immunoglobulin-like cell adhesionmolecule family protein
           3, isoform a protein.
          Length = 589

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 90  YRFFAPCVVGAVDYCFPAGRPREIR 16
           YRFF  CV GA   C  +GR + ++
Sbjct: 164 YRFFVECVRGADGLCQQSGRRKTLK 188


>U55374-3|ABS19462.1|  591|Caenorhabditis elegans
           Immunoglobulin-like cell adhesionmolecule family protein
           3, isoform b protein.
          Length = 591

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 90  YRFFAPCVVGAVDYCFPAGRPREIR 16
           YRFF  CV GA   C  +GR + ++
Sbjct: 164 YRFFVECVRGADGLCQQSGRRKTLK 188


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,664,107
Number of Sequences: 27780
Number of extensions: 227130
Number of successful extensions: 532
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)