Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_F17
         (651 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    25   0.71 
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   5.0  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   6.7  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   6.7  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 24.6 bits (51), Expect = 0.71
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 189  TSSPGRWAPLRGFGPHPGSGSSMGLGAGTRCEPV 88
            +SS     PL+G    P SGSS     G++  PV
Sbjct: 1097 SSSSSEGVPLKGTAVPPPSGSSGPGSTGSKSPPV 1130


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = -1

Query: 162 LRGFGPHPGSGSSMGLGAGTRCEPVGTTTTIERYAAG 52
           + GFG    SG   GL   T  +P+      ER+  G
Sbjct: 125 ISGFGGVQESGDIAGLRNKTHSQPMQGVGNWERHTKG 161


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +2

Query: 80  VVPTGSHRVPAPSPMEDPEPGCGP 151
           ++P   H    PS      PGCGP
Sbjct: 371 MLPETMHMGMGPSLTPLASPGCGP 394


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +2

Query: 80  VVPTGSHRVPAPSPMEDPEPGCGP 151
           ++P   H    PS      PGCGP
Sbjct: 371 MLPETMHMGMGPSLTPLASPGCGP 394


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,167
Number of Sequences: 336
Number of extensions: 3253
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16760905
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)