Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_F17
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha...    35   0.012
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    27   3.1  
SPBC1773.03c |||aminotransferase class-III, unknown specificty|S...    27   3.1  
SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual         27   3.1  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.1  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   5.4  
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo...    26   5.4  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    25   7.2  
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    25   7.2  
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    25   7.2  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   7.2  
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr...    25   9.5  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   9.5  

>SPBC660.15 |||mRNA cleavage factor complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 34.7 bits (76), Expect = 0.012
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +3

Query: 135 NQDVARSPAEVPNDPGKMFVGGLSWQTSPGTL 230
           N+D A   +    + GKMF+GGL+W+T+  +L
Sbjct: 148 NEDNAEETSPFNREDGKMFIGGLNWETTDDSL 179


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = +2

Query: 530 ICGKNRYFMDIIQKSDVRRRPCRMRAHPPFATFR 631
           ICGK  YF  +I K  VR   C +  H    TFR
Sbjct: 341 ICGKRNYFSSVICKELVRPWNCGL--HNSDLTFR 372


>SPBC1773.03c |||aminotransferase class-III, unknown
           specificty|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 421 YLKSLSKLC*RYGVSFYRSILM 486
           Y K++ K+C +YGV FY   +M
Sbjct: 238 YFKAMRKVCDKYGVIFYLDEVM 259


>SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 182

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 314 ERFAGDWASPAXARDALPPVK*ARPATAE 228
           ER+AGD   P   R A+P  +  +P T E
Sbjct: 134 ERYAGDERPPTSMRQAIPKDEDRKPRTLE 162


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
 Frame = +2

Query: 83   VPTGSHRVPAPSPMEDPEPGCGPKPRRGAQR-PGEDVRRRTQLA-D*SRYARRWQVALIS 256
            V  G  R  AP+P  +PEP          Q+   E+ R++ + A D +R A     ++ S
Sbjct: 785  VSAGGSRYYAPAPQAEPEPKIDETSLTEEQKIQLEEARKQRKAADDAARAAIEKYTSIPS 844

Query: 257  PAEVHHVRXPVMPSHQQ 307
              ++H    P+   H Q
Sbjct: 845  LRDLHKPTRPLKRVHWQ 861


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 116 SPMEDPEPGCGPKPRRGAQR 175
           SP++ P P   PKPRR A R
Sbjct: 217 SPVKKPPPPAPPKPRRLAAR 236


>SPBC215.01 ||SPBC3B9.20|GTPase activating
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -3

Query: 457 HTFNKVSTATSSNQLIS*TFTGVYELKFELHHRNLSFLF 341
           H F +   + + +  +    +G+ ELKF    RN+SF+F
Sbjct: 583 HLFLRFDKSMTGSLSLQDLVSGIAELKFRDVMRNISFIF 621


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = -2

Query: 242 PATAERTWTSLPAESSDEHLPRVVGHLCGASGHILVLGLPW 120
           PA+ E +   LP  S D+ +P    H+     H      PW
Sbjct: 202 PASLEGSIHELPRNSDDDGIPASAAHILDLDYHRDSYDSPW 242


>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +1

Query: 418 DYLKSLSKLC*RYGVSFYRSILMKVTFFNVGKLKYILNLR*KPIFYGYNTE 570
           D + SL   C RYG     ++      F+  K++  LN     I Y YN++
Sbjct: 353 DAVDSLIAKCERYGAMISNTMRSWHNLFDDKKMEQFLNTSTGSISYEYNSQ 403


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/36 (36%), Positives = 14/36 (38%)
 Frame = +2

Query: 41  PGAVPAAYRSIVVVVPTGSHRVPAPSPMEDPEPGCG 148
           P   PA   S    VP+G  R P       PEP  G
Sbjct: 353 PSNSPATLNSYTTSVPSGMSRHPMLMNPSTPEPSLG 388


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 6/51 (11%)
 Frame = +2

Query: 44   GAVPAAYRSIV---VVVPTGSHRVPAPSPMEDPEP---GCGPKPRRGAQRP 178
            GA P    S+    V VP+G+  VP PS    P P   G  P P+     P
Sbjct: 1119 GAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAP 1169


>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -3

Query: 247 RDLPPPSVPGLVCQLSPPTNIFPGS 173
           R + PP  P  V Q  PPT +  GS
Sbjct: 29  RTMAPPPAPSRVQQAPPPTAVQGGS 53


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 542  FYRKFKIYFNFPTLKNVTFISID 474
            F++  + YFNFP +K   FI  D
Sbjct: 2110 FFKAEESYFNFPAVKANAFIDPD 2132


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,572,434
Number of Sequences: 5004
Number of extensions: 50489
Number of successful extensions: 128
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)