Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_F17
(651 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19550| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.81
SB_14244| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_50164| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_18879| Best HMM Match : Pkinase_Tyr (HMM E-Value=7e-36) 29 2.5
SB_3164| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05) 29 4.3
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013) 29 4.3
SB_24257| Best HMM Match : DUF583 (HMM E-Value=0.16) 29 4.3
SB_54008| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_19890| Best HMM Match : Drf_FH1 (HMM E-Value=2.4) 28 7.6
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) 28 7.6
SB_46725| Best HMM Match : Extensin_2 (HMM E-Value=1.9) 28 7.6
>SB_19550| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 810
Score = 31.1 bits (67), Expect = 0.81
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = +1
Query: 67 LDRSRSADRLAPRAGPEPH-GRPRTRMWPEAPQRCPTTRGRCSSEDSAGR 213
LD + AD + R +PH G P RC + RCS E+ GR
Sbjct: 462 LDTADGADPVQARPAGKPHRGHAEGDTEPTEQLRCAASEERCSKEELVGR 511
>SB_14244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 344
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -1
Query: 621 ANGGCARIRHGRLRTSDFCIISIKYRFLPQIQN 523
ANG AR+ HG+L D ++ R LP++++
Sbjct: 249 ANGFIARVTHGQLEVDDKALLFKSTRLLPEVEH 281
>SB_50164| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1780
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/93 (20%), Positives = 33/93 (35%)
Frame = +2
Query: 53 PAAYRSIVVVVPTGSHRVPAPSPMEDPEPGCGPKPRRGAQRPGEDVRRRTQLAD*SRYAR 232
P+ Y + + + + ++ P G Q+ + TQ A S +
Sbjct: 377 PSRYDNFTSIQAFNKMQAENQARLQTQRPSAGTTVSTSEQQQPHHSKESTQNAAKSYTSS 436
Query: 233 RWQVALISPAEVHHVRXPVMPSHQQNAQKSTKT 331
A++SP +R PSHQ + T T
Sbjct: 437 MHTNAVLSPTSSEELRSTASPSHQSGSSSPTPT 469
>SB_18879| Best HMM Match : Pkinase_Tyr (HMM E-Value=7e-36)
Length = 617
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = +3
Query: 192 VGGLSWQTSPGTLGGGRSRSFHRRKCITC 278
V LSW SP GGRS F+R +C TC
Sbjct: 373 VATLSW--SPPNNTGGRSDLFYRVECFTC 399
>SB_3164| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 623
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/59 (27%), Positives = 25/59 (42%)
Frame = +2
Query: 65 RSIVVVVPTGSHRVPAPSPMEDPEPGCGPKPRRGAQRPGEDVRRRTQLAD*SRYARRWQ 241
R + +V+ R + P P CGP+PR+G+ RR L + + R Q
Sbjct: 249 REMNIVLNDDKKRGDTDDKVPHPHPPCGPRPRQGSLDEDRFSTRRYSLDENGAFRGRRQ 307
>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
Length = 480
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +2
Query: 86 PTGSHRVPAPSPMEDPEPGCGPKPRRGAQRP 178
PT + P P P P+P GP P +RP
Sbjct: 350 PTSTRSAPPPPPGRAPQPLGGPPPPPPGRRP 380
>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
Length = 392
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +2
Query: 86 PTGSHRVPAPSPMEDPEPGCGPKPRRGAQRP 178
PT + P P P P+P GP P +RP
Sbjct: 262 PTSTRSAPPPPPGRAPQPLGGPPPPPPGRRP 292
>SB_24257| Best HMM Match : DUF583 (HMM E-Value=0.16)
Length = 3999
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +3
Query: 162 EVPNDPGKMFVGGLSWQTSPGTLGGG 239
E P DPG GG +Q PG+ GGG
Sbjct: 563 EAPTDPGSG--GGSGYQDRPGSAGGG 586
>SB_54008| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1940
Score = 28.3 bits (60), Expect = 5.7
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +2
Query: 107 PAPSPMEDPEPGCGPK 154
P+P+ +E PEPGCG K
Sbjct: 362 PSPTLIECPEPGCGKK 377
>SB_19890| Best HMM Match : Drf_FH1 (HMM E-Value=2.4)
Length = 169
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +2
Query: 101 RVPAPSPMEDPEPGCGPKPRRGAQRPGEDV 190
RVP P+P + PE PK A P +V
Sbjct: 56 RVPPPAPKKAPEDATSPKRNEAAPPPVNEV 85
>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
Length = 328
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = +3
Query: 171 NDPGKMFVGGLSWQTSPGTL 230
+D GK+FVGGLS++T+ +L
Sbjct: 26 DDIGKLFVGGLSYETTKESL 45
>SB_46725| Best HMM Match : Extensin_2 (HMM E-Value=1.9)
Length = 496
Score = 27.9 bits (59), Expect = 7.6
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +1
Query: 70 DRSRSADRLAPRAGPEPHGRPRTRMWPEAPQRCPTTRGRCSSEDSAGRLVQVRSAVA 240
+ S++ L+ + P P RP+TR E P + R SS+DS + R A A
Sbjct: 250 EESQAKPSLSTKPKPVPRARPKTR---ETPVGLMSDEDRESSQDSIDEIPDQRPAHA 303
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,215,362
Number of Sequences: 59808
Number of extensions: 430270
Number of successful extensions: 3958
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3950
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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