Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_F17
(651 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC001526-1|AAH01526.1| 328|Homo sapiens musashi homolog 2 (Dros... 46 1e-04
AK093888-1|BAC04244.1| 251|Homo sapiens protein ( Homo sapiens ... 36 0.095
AC003982-3|AAB95636.1| 362|Homo sapiens WUGSC:H_166H1.2 protein. 36 0.13
AB012851-1|BAA33962.1| 362|Homo sapiens Musashi protein. 36 0.13
D89092-1|BAA24361.1| 301|Homo sapiens hnRNP JKTBP protein. 33 0.67
CR407623-1|CAG28551.1| 420|Homo sapiens HNRPDL protein. 33 0.67
BC071944-1|AAH71944.1| 420|Homo sapiens heterogeneous nuclear r... 33 0.67
BC011714-1|AAH11714.1| 420|Homo sapiens heterogeneous nuclear r... 33 0.67
BC007392-1|AAH07392.2| 415|Homo sapiens HNRPDL protein protein. 33 0.67
AY453824-1|AAR17782.1| 298|Homo sapiens CArG binding factor pro... 33 0.67
AC124016-2|AAY40914.1| 420|Homo sapiens unknown protein. 33 0.67
AB066484-1|BAB62188.1| 244|Homo sapiens JKTBP1delta6 protein. 33 0.67
AB017019-1|BAA75241.1| 420|Homo sapiens JKTBP2 protein. 33 0.67
AB017018-2|BAA75240.1| 301|Homo sapiens JKTBP1 protein. 33 0.67
AB017018-1|BAA75239.1| 420|Homo sapiens JKTBP2 protein. 33 0.67
U76713-1|AAC50956.1| 331|Homo sapiens ABBP-1 protein. 33 1.2
M65028-1|AAA36575.1| 284|Homo sapiens hnRNP type A/B protein pr... 33 1.2
BC036708-1|AAH36708.1| 332|Homo sapiens heterogeneous nuclear r... 33 1.2
BC009359-1|AAH09359.1| 285|Homo sapiens heterogeneous nuclear r... 33 1.2
BC004561-1|AAH04561.1| 285|Homo sapiens heterogeneous nuclear r... 33 1.2
BC002625-1|AAH02625.1| 285|Homo sapiens heterogeneous nuclear r... 33 1.2
BC001616-1|AAH01616.1| 285|Homo sapiens heterogeneous nuclear r... 33 1.2
AL834498-1|CAD39156.1| 716|Homo sapiens hypothetical protein pr... 33 1.2
AK223425-1|BAD97145.1| 332|Homo sapiens heterogeneous nuclear r... 33 1.2
AK097657-1|BAC05134.1| 332|Homo sapiens protein ( Homo sapiens ... 33 1.2
AB209181-1|BAD92418.1| 796|Homo sapiens Hypothetical protein DK... 33 1.2
AY310398-1|AAP75619.1| 2213|Homo sapiens sidekick-like protein 1... 32 1.5
AJ251368-1|CAB86193.1| 1150|Homo sapiens calcium channel, alpha ... 32 2.0
AJ251367-1|CAB86192.1| 1143|Homo sapiens calcium channel, alpha ... 32 2.0
AF042792-1|AAB96913.1| 1145|Homo sapiens alpha 2 delta calcium c... 32 2.0
AF040709-1|AAC70914.1| 1145|Homo sapiens putative tumor suppress... 32 2.0
AB011130-1|BAA25484.1| 1145|Homo sapiens KIAA0558 protein protein. 32 2.0
BC016613-1|AAH16613.1| 571|Homo sapiens similar to hypothetical... 31 2.7
AE006464-2|AAK61234.1| 871|Homo sapiens unknown protein. 31 2.7
U02019-1|AAC50056.1| 286|Homo sapiens p37 AUF1 protein. 31 3.6
D55671-1|BAA09522.1| 267|Homo sapiens heterogeneous nuclear rib... 31 3.6
AJ400879-3|CAC35389.1| 1214|Homo sapiens KIAA0298 protein protein. 31 3.6
AF026126-3|AAC23476.1| 336|Homo sapiens heterogeneous nuclear r... 31 3.6
AB002296-1|BAA20758.2| 901|Homo sapiens KIAA0298 protein protein. 31 3.6
BC110367-1|AAI10368.1| 1047|Homo sapiens chromosome 15 open read... 31 4.7
BC109195-1|AAI09196.1| 504|Homo sapiens C15orf39 protein protein. 31 4.7
BC011379-1|AAH11379.2| 1047|Homo sapiens chromosome 15 open read... 31 4.7
AL834382-1|CAD39045.1| 505|Homo sapiens hypothetical protein pr... 31 4.7
AL445686-3|CAI14683.1| 913|Homo sapiens serine/arginine repetit... 31 4.7
AL445648-2|CAH73089.1| 913|Homo sapiens serine/arginine repetit... 31 4.7
AL360143-1|CAB96089.1| 425|Homo sapiens hypothetical protein DK... 31 4.7
AK128205-1|BAC87324.1| 1047|Homo sapiens protein ( Homo sapiens ... 31 4.7
AK125604-1|BAC86215.1| 1047|Homo sapiens protein ( Homo sapiens ... 31 4.7
AF495726-1|AAQ06680.1| 892|Homo sapiens unknown protein. 31 4.7
AB037863-1|BAA92680.1| 627|Homo sapiens KIAA1442 protein protein. 31 4.7
BC011851-1|AAH11851.1| 314|Homo sapiens chromosome 20 open read... 30 6.2
BC007957-1|AAH07957.1| 314|Homo sapiens chromosome 20 open read... 30 6.2
BC000643-1|AAH00643.1| 314|Homo sapiens chromosome 20 open read... 30 6.2
AL121891-8|CAD55940.1| 298|Homo sapiens chromosome 20 open read... 30 6.2
AL121891-7|CAD55939.1| 314|Homo sapiens chromosome 20 open read... 30 6.2
AF118265-1|AAD21055.1| 502|Homo sapiens orphan G protein-couple... 30 8.2
>BC001526-1|AAH01526.1| 328|Homo sapiens musashi homolog 2
(Drosophila) protein.
Length = 328
Score = 46.0 bits (104), Expect = 1e-04
Identities = 21/46 (45%), Positives = 30/46 (65%)
Frame = +3
Query: 135 NQDVARSPAEVPNDPGKMFVGGLSWQTSPGTLGGGRSRSFHRRKCI 272
+Q + S + +DPGKMF+GGLSWQTSP +L S+ R+C+
Sbjct: 6 SQGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECM 51
>AK093888-1|BAC04244.1| 251|Homo sapiens protein ( Homo sapiens
cDNA FLJ36569 fis, clone TRACH2010824, highly similar to
Ribonucleoprotein. ).
Length = 251
Score = 36.3 bits (80), Expect = 0.095
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +3
Query: 183 KMFVGGLSWQTSPGTLGGGRSRSFHRRKCI 272
KMF+GGLSWQTSP +L S+ R+C+
Sbjct: 18 KMFIGGLSWQTSPDSLRDYFSKFGEIRECM 47
>AC003982-3|AAB95636.1| 362|Homo sapiens WUGSC:H_166H1.2 protein.
Length = 362
Score = 35.9 bits (79), Expect = 0.13
Identities = 13/17 (76%), Positives = 16/17 (94%)
Frame = +3
Query: 168 PNDPGKMFVGGLSWQTS 218
P+DP KMF+GGLSWQT+
Sbjct: 16 PHDPCKMFIGGLSWQTT 32
>AB012851-1|BAA33962.1| 362|Homo sapiens Musashi protein.
Length = 362
Score = 35.9 bits (79), Expect = 0.13
Identities = 13/17 (76%), Positives = 16/17 (94%)
Frame = +3
Query: 168 PNDPGKMFVGGLSWQTS 218
P+DP KMF+GGLSWQT+
Sbjct: 16 PHDPCKMFIGGLSWQTT 32
>D89092-1|BAA24361.1| 301|Homo sapiens hnRNP JKTBP protein.
Length = 301
Score = 33.5 bits (73), Expect = 0.67
Identities = 19/46 (41%), Positives = 25/46 (54%)
Frame = +3
Query: 174 DPGKMFVGGLSWQTSPGTLGGGRSRSFHRRKCITCVRR*CPVTSKT 311
D GKMF+GGLSW TS L SR + + C + PVT ++
Sbjct: 27 DDGKMFIGGLSWDTSKKDLTEYLSRF---GEVVDCTIKTDPVTGRS 69
>CR407623-1|CAG28551.1| 420|Homo sapiens HNRPDL protein.
Length = 420
Score = 33.5 bits (73), Expect = 0.67
Identities = 19/46 (41%), Positives = 25/46 (54%)
Frame = +3
Query: 174 DPGKMFVGGLSWQTSPGTLGGGRSRSFHRRKCITCVRR*CPVTSKT 311
D GKMF+GGLSW TS L SR + + C + PVT ++
Sbjct: 146 DDGKMFIGGLSWDTSKKDLTEYLSRF---GEVVDCTIKTDPVTGRS 188
>BC071944-1|AAH71944.1| 420|Homo sapiens heterogeneous nuclear
ribonucleoprotein D-like protein.
Length = 420
Score = 33.5 bits (73), Expect = 0.67
Identities = 19/46 (41%), Positives = 25/46 (54%)
Frame = +3
Query: 174 DPGKMFVGGLSWQTSPGTLGGGRSRSFHRRKCITCVRR*CPVTSKT 311
D GKMF+GGLSW TS L SR + + C + PVT ++
Sbjct: 146 DDGKMFIGGLSWDTSKKDLTEYLSRF---GEVVDCTIKTDPVTGRS 188
>BC011714-1|AAH11714.1| 420|Homo sapiens heterogeneous nuclear
ribonucleoprotein D-like protein.
Length = 420
Score = 33.5 bits (73), Expect = 0.67
Identities = 19/46 (41%), Positives = 25/46 (54%)
Frame = +3
Query: 174 DPGKMFVGGLSWQTSPGTLGGGRSRSFHRRKCITCVRR*CPVTSKT 311
D GKMF+GGLSW TS L SR + + C + PVT ++
Sbjct: 146 DDGKMFIGGLSWDTSKKDLTEYLSRF---GEVVDCTIKTDPVTGRS 188
>BC007392-1|AAH07392.2| 415|Homo sapiens HNRPDL protein protein.
Length = 415
Score = 33.5 bits (73), Expect = 0.67
Identities = 19/46 (41%), Positives = 25/46 (54%)
Frame = +3
Query: 174 DPGKMFVGGLSWQTSPGTLGGGRSRSFHRRKCITCVRR*CPVTSKT 311
D GKMF+GGLSW TS L SR + + C + PVT ++
Sbjct: 141 DDGKMFIGGLSWDTSKKDLTEYLSRF---GEVVDCTIKTDPVTGRS 183
>AY453824-1|AAR17782.1| 298|Homo sapiens CArG binding factor
protein.
Length = 298
Score = 33.5 bits (73), Expect = 0.67
Identities = 19/46 (41%), Positives = 25/46 (54%)
Frame = +3
Query: 174 DPGKMFVGGLSWQTSPGTLGGGRSRSFHRRKCITCVRR*CPVTSKT 311
D GKMF+GGLSW TS L SR + + C + PVT ++
Sbjct: 24 DDGKMFIGGLSWDTSKKDLTEYLSRF---GEVVDCTIKTDPVTGRS 66
>AC124016-2|AAY40914.1| 420|Homo sapiens unknown protein.
Length = 420
Score = 33.5 bits (73), Expect = 0.67
Identities = 19/46 (41%), Positives = 25/46 (54%)
Frame = +3
Query: 174 DPGKMFVGGLSWQTSPGTLGGGRSRSFHRRKCITCVRR*CPVTSKT 311
D GKMF+GGLSW TS L SR + + C + PVT ++
Sbjct: 146 DDGKMFIGGLSWDTSKKDLTEYLSRF---GEVVDCTIKTDPVTGRS 188
>AB066484-1|BAB62188.1| 244|Homo sapiens JKTBP1delta6 protein.
Length = 244
Score = 33.5 bits (73), Expect = 0.67
Identities = 19/46 (41%), Positives = 25/46 (54%)
Frame = +3
Query: 174 DPGKMFVGGLSWQTSPGTLGGGRSRSFHRRKCITCVRR*CPVTSKT 311
D GKMF+GGLSW TS L SR + + C + PVT ++
Sbjct: 27 DDGKMFIGGLSWDTSKKDLTEYLSRF---GEVVDCTIKTDPVTGRS 69
>AB017019-1|BAA75241.1| 420|Homo sapiens JKTBP2 protein.
Length = 420
Score = 33.5 bits (73), Expect = 0.67
Identities = 19/46 (41%), Positives = 25/46 (54%)
Frame = +3
Query: 174 DPGKMFVGGLSWQTSPGTLGGGRSRSFHRRKCITCVRR*CPVTSKT 311
D GKMF+GGLSW TS L SR + + C + PVT ++
Sbjct: 146 DDGKMFIGGLSWDTSKKDLTEYLSRF---GEVVDCTIKTDPVTGRS 188
>AB017018-2|BAA75240.1| 301|Homo sapiens JKTBP1 protein.
Length = 301
Score = 33.5 bits (73), Expect = 0.67
Identities = 19/46 (41%), Positives = 25/46 (54%)
Frame = +3
Query: 174 DPGKMFVGGLSWQTSPGTLGGGRSRSFHRRKCITCVRR*CPVTSKT 311
D GKMF+GGLSW TS L SR + + C + PVT ++
Sbjct: 27 DDGKMFIGGLSWDTSKKDLTEYLSRF---GEVVDCTIKTDPVTGRS 69
>AB017018-1|BAA75239.1| 420|Homo sapiens JKTBP2 protein.
Length = 420
Score = 33.5 bits (73), Expect = 0.67
Identities = 19/46 (41%), Positives = 25/46 (54%)
Frame = +3
Query: 174 DPGKMFVGGLSWQTSPGTLGGGRSRSFHRRKCITCVRR*CPVTSKT 311
D GKMF+GGLSW TS L SR + + C + PVT ++
Sbjct: 146 DDGKMFIGGLSWDTSKKDLTEYLSRF---GEVVDCTIKTDPVTGRS 188
>U76713-1|AAC50956.1| 331|Homo sapiens ABBP-1 protein.
Length = 331
Score = 32.7 bits (71), Expect = 1.2
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = +3
Query: 174 DPGKMFVGGLSWQTS 218
D GKMFVGGLSW TS
Sbjct: 66 DAGKMFVGGLSWDTS 80
>M65028-1|AAA36575.1| 284|Homo sapiens hnRNP type A/B protein
protein.
Length = 284
Score = 32.7 bits (71), Expect = 1.2
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = +3
Query: 174 DPGKMFVGGLSWQTS 218
D GKMFVGGLSW TS
Sbjct: 66 DAGKMFVGGLSWDTS 80
>BC036708-1|AAH36708.1| 332|Homo sapiens heterogeneous nuclear
ribonucleoprotein A/B protein.
Length = 332
Score = 32.7 bits (71), Expect = 1.2
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = +3
Query: 174 DPGKMFVGGLSWQTS 218
D GKMFVGGLSW TS
Sbjct: 68 DAGKMFVGGLSWDTS 82
>BC009359-1|AAH09359.1| 285|Homo sapiens heterogeneous nuclear
ribonucleoprotein A/B protein.
Length = 285
Score = 32.7 bits (71), Expect = 1.2
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = +3
Query: 174 DPGKMFVGGLSWQTS 218
D GKMFVGGLSW TS
Sbjct: 68 DAGKMFVGGLSWDTS 82
>BC004561-1|AAH04561.1| 285|Homo sapiens heterogeneous nuclear
ribonucleoprotein A/B protein.
Length = 285
Score = 32.7 bits (71), Expect = 1.2
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = +3
Query: 174 DPGKMFVGGLSWQTS 218
D GKMFVGGLSW TS
Sbjct: 68 DAGKMFVGGLSWDTS 82
>BC002625-1|AAH02625.1| 285|Homo sapiens heterogeneous nuclear
ribonucleoprotein A/B protein.
Length = 285
Score = 32.7 bits (71), Expect = 1.2
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = +3
Query: 174 DPGKMFVGGLSWQTS 218
D GKMFVGGLSW TS
Sbjct: 68 DAGKMFVGGLSWDTS 82
>BC001616-1|AAH01616.1| 285|Homo sapiens heterogeneous nuclear
ribonucleoprotein A/B protein.
Length = 285
Score = 32.7 bits (71), Expect = 1.2
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = +3
Query: 174 DPGKMFVGGLSWQTS 218
D GKMFVGGLSW TS
Sbjct: 68 DAGKMFVGGLSWDTS 82
>AL834498-1|CAD39156.1| 716|Homo sapiens hypothetical protein
protein.
Length = 716
Score = 32.7 bits (71), Expect = 1.2
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +2
Query: 83 VPTGSHRVPAPSPMEDPEPGCGPKPRRGAQRPGEDVRRR 199
+P VPAP+P E P P C P G +R G R R
Sbjct: 678 IPVPGEAVPAPTPPESPTPHC-PPAAPGGERAGTWRRHR 715
>AK223425-1|BAD97145.1| 332|Homo sapiens heterogeneous nuclear
ribonucleoprotein AB isoform a variant protein.
Length = 332
Score = 32.7 bits (71), Expect = 1.2
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = +3
Query: 174 DPGKMFVGGLSWQTS 218
D GKMFVGGLSW TS
Sbjct: 68 DAGKMFVGGLSWDTS 82
>AK097657-1|BAC05134.1| 332|Homo sapiens protein ( Homo sapiens
cDNA FLJ40338 fis, clone TESTI2032067, highly similar to
Rattus norvegicus mRNA for type A/B hnRNP protein p40.
).
Length = 332
Score = 32.7 bits (71), Expect = 1.2
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = +3
Query: 174 DPGKMFVGGLSWQTS 218
D GKMFVGGLSW TS
Sbjct: 68 DAGKMFVGGLSWDTS 82
>AB209181-1|BAD92418.1| 796|Homo sapiens Hypothetical protein
DKFZp761I032 variant protein.
Length = 796
Score = 32.7 bits (71), Expect = 1.2
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +2
Query: 83 VPTGSHRVPAPSPMEDPEPGCGPKPRRGAQRPGEDVRRR 199
+P VPAP+P E P P C P G +R G R R
Sbjct: 758 IPVPGEAVPAPTPPESPTPHC-PPAAPGGERAGTWRRHR 795
>AY310398-1|AAP75619.1| 2213|Homo sapiens sidekick-like protein 1
protein.
Length = 2213
Score = 32.3 bits (70), Expect = 1.5
Identities = 19/43 (44%), Positives = 21/43 (48%)
Frame = +1
Query: 79 RSADRLAPRAGPEPHGRPRTRMWPEAPQRCPTTRGRCSSEDSA 207
R+ LAPR GPEP RPR PE P GRC +A
Sbjct: 35 RARPSLAPRPGPEP-SRPRAA--PETPGGDTAGAGRCGGRRAA 74
>AJ251368-1|CAB86193.1| 1150|Homo sapiens calcium channel, alpha
2/delta subunit 2 protein.
Length = 1150
Score = 31.9 bits (69), Expect = 2.0
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 107 PAPSPMEDPEPGCGPKPRRGAQRP 178
P P+ P PGCGP P G +RP
Sbjct: 13 PGPARTARPWPGCGPHPGPGTRRP 36
>AJ251367-1|CAB86192.1| 1143|Homo sapiens calcium channel, alpha
2/delta subunit 2 protein.
Length = 1143
Score = 31.9 bits (69), Expect = 2.0
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 107 PAPSPMEDPEPGCGPKPRRGAQRP 178
P P+ P PGCGP P G +RP
Sbjct: 13 PGPARTARPWPGCGPHPGPGTRRP 36
>AF042792-1|AAB96913.1| 1145|Homo sapiens alpha 2 delta calcium
channel subunit isoform I protein.
Length = 1145
Score = 31.9 bits (69), Expect = 2.0
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 107 PAPSPMEDPEPGCGPKPRRGAQRP 178
P P+ P PGCGP P G +RP
Sbjct: 13 PGPARTARPWPGCGPHPGPGTRRP 36
>AF040709-1|AAC70914.1| 1145|Homo sapiens putative tumor suppressor
gene 26 protein alpha 2 delta calcium channel subunit
protein.
Length = 1145
Score = 31.9 bits (69), Expect = 2.0
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 107 PAPSPMEDPEPGCGPKPRRGAQRP 178
P P+ P PGCGP P G +RP
Sbjct: 13 PGPARTARPWPGCGPHPGPGTRRP 36
>AB011130-1|BAA25484.1| 1145|Homo sapiens KIAA0558 protein protein.
Length = 1145
Score = 31.9 bits (69), Expect = 2.0
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 107 PAPSPMEDPEPGCGPKPRRGAQRP 178
P P+ P PGCGP P G +RP
Sbjct: 13 PGPARTARPWPGCGPHPGPGTRRP 36
>BC016613-1|AAH16613.1| 571|Homo sapiens similar to hypothetical
protein FLJ13841 protein.
Length = 571
Score = 31.5 bits (68), Expect = 2.7
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 80 VVPTGSHRVPAPSPMEDPEPGCGPKPRRGAQRPGED 187
V P PAP ++ P PG GP PR + PG++
Sbjct: 288 VSPRSPSGTPAPGLLKVPVPGLGPWPRVTPRDPGQE 323
>AE006464-2|AAK61234.1| 871|Homo sapiens unknown protein.
Length = 871
Score = 31.5 bits (68), Expect = 2.7
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 80 VVPTGSHRVPAPSPMEDPEPGCGPKPRRGAQRPGED 187
V P PAP ++ P PG GP PR + PG++
Sbjct: 288 VSPRSPSGTPAPGLLKVPVPGLGPWPRVTPRDPGQE 323
>U02019-1|AAC50056.1| 286|Homo sapiens p37 AUF1 protein.
Length = 286
Score = 31.1 bits (67), Expect = 3.6
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +3
Query: 174 DPGKMFVGGLSWQTS 218
D GKMF+GGLSW T+
Sbjct: 74 DEGKMFIGGLSWDTT 88
>D55671-1|BAA09522.1| 267|Homo sapiens heterogeneous nuclear
ribonucleoprotein D (hnRNP D) protein.
Length = 267
Score = 31.1 bits (67), Expect = 3.6
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +3
Query: 174 DPGKMFVGGLSWQTS 218
D GKMF+GGLSW T+
Sbjct: 7 DEGKMFIGGLSWDTT 21
>AJ400879-3|CAC35389.1| 1214|Homo sapiens KIAA0298 protein protein.
Length = 1214
Score = 31.1 bits (67), Expect = 3.6
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -3
Query: 313 SVLLVTGHHRRTHVMHFRR*NERDLPPPSVP 221
S+ + GHH++ + HF++ ++ LPPP P
Sbjct: 431 SIQVQFGHHQKLKLSHFQQQPQQQLPPPPPP 461
>AF026126-3|AAC23476.1| 336|Homo sapiens heterogeneous nuclear
ribonucleoprotein D protein.
Length = 336
Score = 31.1 bits (67), Expect = 3.6
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +3
Query: 174 DPGKMFVGGLSWQTS 218
D GKMF+GGLSW T+
Sbjct: 76 DEGKMFIGGLSWDTT 90
>AB002296-1|BAA20758.2| 901|Homo sapiens KIAA0298 protein protein.
Length = 901
Score = 31.1 bits (67), Expect = 3.6
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -3
Query: 313 SVLLVTGHHRRTHVMHFRR*NERDLPPPSVP 221
S+ + GHH++ + HF++ ++ LPPP P
Sbjct: 466 SIQVQFGHHQKLKLSHFQQQPQQQLPPPPPP 496
>BC110367-1|AAI10368.1| 1047|Homo sapiens chromosome 15 open reading
frame 39 protein.
Length = 1047
Score = 30.7 bits (66), Expect = 4.7
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = -2
Query: 290 SPAXARDALP-PVK*ARPATAERTWTSLPAESSDEHLPRVVGHLCGA-SGHI 141
+PA ARD P P A PA A TS P +S ++H + LC A SG +
Sbjct: 734 APASARDPAPAPAPVAGPAPAS---TSAPGDSLEQHFTGLHASLCDAISGSV 782
>BC109195-1|AAI09196.1| 504|Homo sapiens C15orf39 protein protein.
Length = 504
Score = 30.7 bits (66), Expect = 4.7
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = -2
Query: 290 SPAXARDALP-PVK*ARPATAERTWTSLPAESSDEHLPRVVGHLCGA-SGHI 141
+PA ARD P P A PA A TS P +S ++H + LC A SG +
Sbjct: 296 APASARDPAPAPAPVAGPAPAS---TSAPGDSLEQHFTGLHASLCDAISGSV 344
>BC011379-1|AAH11379.2| 1047|Homo sapiens chromosome 15 open reading
frame 39 protein.
Length = 1047
Score = 30.7 bits (66), Expect = 4.7
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = -2
Query: 290 SPAXARDALP-PVK*ARPATAERTWTSLPAESSDEHLPRVVGHLCGA-SGHI 141
+PA ARD P P A PA A TS P +S ++H + LC A SG +
Sbjct: 734 APASARDPAPAPAPVAGPAPAS---TSAPGDSLEQHFTGLHASLCDAISGSV 782
>AL834382-1|CAD39045.1| 505|Homo sapiens hypothetical protein
protein.
Length = 505
Score = 30.7 bits (66), Expect = 4.7
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = -2
Query: 290 SPAXARDALP-PVK*ARPATAERTWTSLPAESSDEHLPRVVGHLCGA-SGHI 141
+PA ARD P P A PA A TS P +S ++H + LC A SG +
Sbjct: 174 APASARDPAPAPAPVAGPAPAS---TSAPGDSLEQHFTGLHASLCDAISGSV 222
>AL445686-3|CAI14683.1| 913|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 913
Score = 30.7 bits (66), Expect = 4.7
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Frame = +1
Query: 73 RSRSADRLAPRAGPEPHGRPRTRMWPEAPQ----RCPTTRGRCSSEDSAG 210
RSRS R +PR P P R R P P+ R P R R SS +G
Sbjct: 303 RSRSRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPVRRRRRSSASLSG 352
>AL445648-2|CAH73089.1| 913|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 913
Score = 30.7 bits (66), Expect = 4.7
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Frame = +1
Query: 73 RSRSADRLAPRAGPEPHGRPRTRMWPEAPQ----RCPTTRGRCSSEDSAG 210
RSRS R +PR P P R R P P+ R P R R SS +G
Sbjct: 303 RSRSRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPVRRRRRSSASLSG 352
>AL360143-1|CAB96089.1| 425|Homo sapiens hypothetical protein
DKFZP434H132 protein.
Length = 425
Score = 30.7 bits (66), Expect = 4.7
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = -2
Query: 290 SPAXARDALP-PVK*ARPATAERTWTSLPAESSDEHLPRVVGHLCGA-SGHI 141
+PA ARD P P A PA A TS P +S ++H + LC A SG +
Sbjct: 221 APASARDPAPAPAPVAGPAPAS---TSAPGDSLEQHFTGLHASLCDAISGSV 269
>AK128205-1|BAC87324.1| 1047|Homo sapiens protein ( Homo sapiens
cDNA FLJ46337 fis, clone TESTI4046245. ).
Length = 1047
Score = 30.7 bits (66), Expect = 4.7
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = -2
Query: 290 SPAXARDALP-PVK*ARPATAERTWTSLPAESSDEHLPRVVGHLCGA-SGHI 141
+PA ARD P P A PA A TS P +S ++H + LC A SG +
Sbjct: 734 APASARDPAPAPAPVAGPAPAS---TSAPGDSLEQHFTGLHASLCDAISGSV 782
>AK125604-1|BAC86215.1| 1047|Homo sapiens protein ( Homo sapiens
cDNA FLJ43616 fis, clone SPLEN2016554. ).
Length = 1047
Score = 30.7 bits (66), Expect = 4.7
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = -2
Query: 290 SPAXARDALP-PVK*ARPATAERTWTSLPAESSDEHLPRVVGHLCGA-SGHI 141
+PA ARD P P A PA A TS P +S ++H + LC A SG +
Sbjct: 734 APASARDPAPAPAPVAGPAPAS---TSAPGDSLEQHFTGLHASLCDAISGSV 782
>AF495726-1|AAQ06680.1| 892|Homo sapiens unknown protein.
Length = 892
Score = 30.7 bits (66), Expect = 4.7
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = -2
Query: 290 SPAXARDALP-PVK*ARPATAERTWTSLPAESSDEHLPRVVGHLCGA-SGHI 141
+PA ARD P P A PA A TS P +S ++H + LC A SG +
Sbjct: 579 APASARDPAPAPAPVAGPAPAS---TSAPGDSLEQHFTGLHASLCDAISGSV 627
>AB037863-1|BAA92680.1| 627|Homo sapiens KIAA1442 protein protein.
Length = 627
Score = 30.7 bits (66), Expect = 4.7
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +2
Query: 41 PGAVPAAYRSIVVVVPTGSHRV-PAPSPMEDPEPGCGPKPRRGAQRP 178
PG+ P+ P R+ P +P + P PG PRRGA RP
Sbjct: 580 PGS-PSFLNGSTATSPFAKERLRPRAAPPKLPTPGLPQSPRRGASRP 625
>BC011851-1|AAH11851.1| 314|Homo sapiens chromosome 20 open reading
frame 116 protein.
Length = 314
Score = 30.3 bits (65), Expect = 6.2
Identities = 21/82 (25%), Positives = 35/82 (42%)
Frame = +2
Query: 92 GSHRVPAPSPMEDPEPGCGPKPRRGAQRPGEDVRRRTQLAD*SRYARRWQVALISPAEVH 271
G+ RV P P+E EP G +P RRR L + RR Q + A+ +
Sbjct: 43 GAGRVAQPGPLEPEEPRAGGRP-----------RRRRDLGSRLQAQRRAQRVAWAEADEN 91
Query: 272 HVRXPVMPSHQQNAQKSTKTYL 337
++ ++ +K +T+L
Sbjct: 92 EEEAVILAQEEEGVEKPAETHL 113
>BC007957-1|AAH07957.1| 314|Homo sapiens chromosome 20 open reading
frame 116 protein.
Length = 314
Score = 30.3 bits (65), Expect = 6.2
Identities = 21/82 (25%), Positives = 35/82 (42%)
Frame = +2
Query: 92 GSHRVPAPSPMEDPEPGCGPKPRRGAQRPGEDVRRRTQLAD*SRYARRWQVALISPAEVH 271
G+ RV P P+E EP G +P RRR L + RR Q + A+ +
Sbjct: 43 GAGRVAQPGPLEPEEPRAGGRP-----------RRRRDLGSRLQAQRRAQRVAWAEADEN 91
Query: 272 HVRXPVMPSHQQNAQKSTKTYL 337
++ ++ +K +T+L
Sbjct: 92 EEEAVILAQEEEGVEKPAETHL 113
>BC000643-1|AAH00643.1| 314|Homo sapiens chromosome 20 open reading
frame 116 protein.
Length = 314
Score = 30.3 bits (65), Expect = 6.2
Identities = 21/82 (25%), Positives = 35/82 (42%)
Frame = +2
Query: 92 GSHRVPAPSPMEDPEPGCGPKPRRGAQRPGEDVRRRTQLAD*SRYARRWQVALISPAEVH 271
G+ RV P P+E EP G +P RRR L + RR Q + A+ +
Sbjct: 43 GAGRVAQPGPLEPEEPRAGGRP-----------RRRRDLGSRLQAQRRAQRVAWAEADEN 91
Query: 272 HVRXPVMPSHQQNAQKSTKTYL 337
++ ++ +K +T+L
Sbjct: 92 EEEAVILAQEEEGVEKPAETHL 113
>AL121891-8|CAD55940.1| 298|Homo sapiens chromosome 20 open reading
frame 116 protein.
Length = 298
Score = 30.3 bits (65), Expect = 6.2
Identities = 21/82 (25%), Positives = 35/82 (42%)
Frame = +2
Query: 92 GSHRVPAPSPMEDPEPGCGPKPRRGAQRPGEDVRRRTQLAD*SRYARRWQVALISPAEVH 271
G+ RV P P+E EP G +P RRR L + RR Q + A+ +
Sbjct: 43 GAGRVAQPGPLEPEEPRAGGRP-----------RRRRDLGSRLQAQRRAQRVAWAEADEN 91
Query: 272 HVRXPVMPSHQQNAQKSTKTYL 337
++ ++ +K +T+L
Sbjct: 92 EEEAVILAQEEEGVEKPAETHL 113
>AL121891-7|CAD55939.1| 314|Homo sapiens chromosome 20 open reading
frame 116 protein.
Length = 314
Score = 30.3 bits (65), Expect = 6.2
Identities = 21/82 (25%), Positives = 35/82 (42%)
Frame = +2
Query: 92 GSHRVPAPSPMEDPEPGCGPKPRRGAQRPGEDVRRRTQLAD*SRYARRWQVALISPAEVH 271
G+ RV P P+E EP G +P RRR L + RR Q + A+ +
Sbjct: 43 GAGRVAQPGPLEPEEPRAGGRP-----------RRRRDLGSRLQAQRRAQRVAWAEADEN 91
Query: 272 HVRXPVMPSHQQNAQKSTKTYL 337
++ ++ +K +T+L
Sbjct: 92 EEEAVILAQEEEGVEKPAETHL 113
>AF118265-1|AAD21055.1| 502|Homo sapiens orphan G protein-coupled
receptor GPR44 protein.
Length = 502
Score = 29.9 bits (64), Expect = 8.2
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = -3
Query: 244 DLPPPSVPGLVCQLSPPTNIFPGSLGTS-AGLRA--TSWF 134
DLP S G++ PP NIF G +G S AG + SWF
Sbjct: 18 DLPKHSNAGILFPPPPPPNIFVGHIGISWAGSHSGPLSWF 57
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,905,161
Number of Sequences: 237096
Number of extensions: 2268406
Number of successful extensions: 10692
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 8307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10424
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7253890590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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