Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_F17
(651 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 37 0.014
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 37 0.014
Z67754-2|CAA91752.2| 677|Caenorhabditis elegans Hypothetical pr... 29 2.2
AC006672-7|AAM98004.1| 668|Caenorhabditis elegans Hypothetical ... 29 3.8
U56966-4|AAA98719.2| 906|Caenorhabditis elegans Ace(angiotensin... 28 5.0
U56966-3|AAU05584.1| 332|Caenorhabditis elegans Ace(angiotensin... 28 5.0
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ... 28 5.0
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ... 28 6.6
U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated p... 27 8.7
D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine recep... 27 8.7
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 36.7 bits (81), Expect = 0.014
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = +3
Query: 174 DPGKMFVGGLSWQTSPGTL 230
DPGKMF+GGLSWQT+ L
Sbjct: 43 DPGKMFIGGLSWQTTAENL 61
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 36.7 bits (81), Expect = 0.014
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = +3
Query: 174 DPGKMFVGGLSWQTSPGTL 230
DPGKMF+GGLSWQT+ L
Sbjct: 43 DPGKMFIGGLSWQTTAENL 61
>Z67754-2|CAA91752.2| 677|Caenorhabditis elegans Hypothetical
protein C34E11.2 protein.
Length = 677
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 148 PEAPQRCPTTRGRCSSEDSAGRLVQVRSAVAGRA 249
P+ P C T+ S EDS+GR + +A+ RA
Sbjct: 272 PKKPYHCSTSSLDSSGEDSSGRRSEASTAIKSRA 305
>AC006672-7|AAM98004.1| 668|Caenorhabditis elegans Hypothetical
protein K08D12.6 protein.
Length = 668
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/46 (36%), Positives = 19/46 (41%)
Frame = +2
Query: 41 PGAVPAAYRSIVVVVPTGSHRVPAPSPMEDPEPGCGPKPRRGAQRP 178
P A PA + V P VPAP+P P P CG A P
Sbjct: 301 PAAAPAPADAPVEQAPVA---VPAPAPAAAPAPDCGSAAPAPAAAP 343
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = +2
Query: 41 PGAVPAAYRSIVVVVPTGSHRVPAPSPMEDPEPGCG 148
P A PA + V P VPAP+P P P CG
Sbjct: 168 PAAAPAPADAPVEQAPVA---VPAPAPAAAPAPDCG 200
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = +2
Query: 41 PGAVPAAYRSIVVVVPTGSHRVPAPSPMEDPEPGCG 148
P A PA + V P VPAP+P P P CG
Sbjct: 618 PAAAPAPADAPVEQAPVA---VPAPAPAAAPAPDCG 650
>U56966-4|AAA98719.2| 906|Caenorhabditis elegans Ace(angiotensin
converting enzyme)-like non-peptidase protein 1, isoform
a protein.
Length = 906
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +2
Query: 92 GSHRVPAPSPMEDPEPGCGPKP 157
GS VP P P +PEP PKP
Sbjct: 60 GSVPVPEPEPKPEPEPEPEPKP 81
>U56966-3|AAU05584.1| 332|Caenorhabditis elegans Ace(angiotensin
converting enzyme)-like non-peptidase protein 1, isoform
b protein.
Length = 332
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +2
Query: 92 GSHRVPAPSPMEDPEPGCGPKP 157
GS VP P P +PEP PKP
Sbjct: 60 GSVPVPEPEPKPEPEPEPEPKP 81
>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
protein Y40C5A.3 protein.
Length = 2344
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = +2
Query: 41 PGAVPAAYRSIVVVVPTGSHRVPAPSPMEDPEPGCGPKPRRGAQRP 178
P P Y VVV R P P P P+P P+P+ Q+P
Sbjct: 2012 PRIQPRPYNPQPVVVQRPQFR-PQPQPRPQPQPQPQPQPQPQPQQP 2056
>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
protein Y53C10A.10 protein.
Length = 1582
Score = 27.9 bits (59), Expect = 6.6
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2
Query: 104 VPAPSPMEDPEPGCGPKP 157
+P P+P+ P PG GP P
Sbjct: 929 IPVPNPIPKPNPGPGPGP 946
>U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated
protein 68 protein.
Length = 5079
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = -1
Query: 171 WAPLRGFGPHPGSGSSMG 118
WA GF P PGSG MG
Sbjct: 573 WANSVGFKPFPGSGDKMG 590
>D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine receptor
protein.
Length = 5071
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = -1
Query: 171 WAPLRGFGPHPGSGSSMG 118
WA GF P PGSG MG
Sbjct: 694 WANSVGFKPFPGSGDKMG 711
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,787,536
Number of Sequences: 27780
Number of extensions: 318679
Number of successful extensions: 1277
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1246
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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