Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_F15
         (579 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz...   270   1e-73
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz...   270   1e-73
SPAC19D5.05c |||U3 snoRNP-associated protein Imp3 |Schizosacchar...    57   2e-09
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    29   0.49 
SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated |Schizosaccharom...    27   2.6  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    25   8.0  

>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 192

 Score =  270 bits (662), Expect = 1e-73
 Identities = 124/158 (78%), Positives = 143/158 (90%)
 Frame = +2

Query: 104 RPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNAL 283
           RPFE ARLD ELK+ GEYGLRNK E+WRV  TL++IR+AARELLTL+EKDPKRLFEGNA+
Sbjct: 17  RPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDEKDPKRLFEGNAI 76

Query: 284 LRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRV 463
           +RRLVR+G+LDE +MKLDYVL L+IEDFLERRLQTQVFK GLAKSIHHAR+LI QRHIRV
Sbjct: 77  IRRLVRLGILDESRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHHARVLIFQRHIRV 136

Query: 464 RKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPXRVKR 577
            KQ+VN+PSF+VRLD+ KHIDF+L SP+GGGRP R KR
Sbjct: 137 GKQIVNVPSFVVRLDAQKHIDFALSSPYGGGRPGRCKR 174


>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 191

 Score =  270 bits (661), Expect = 1e-73
 Identities = 124/158 (78%), Positives = 143/158 (90%)
 Frame = +2

Query: 104 RPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNAL 283
           RPFE ARLD ELK+ GEYGLRNK E+WRV  TL++IR+AARELLTL+EKDPKRLFEGNA+
Sbjct: 17  RPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDEKDPKRLFEGNAI 76

Query: 284 LRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRV 463
           +RRLVR+G+LDE +MKLDYVL L+IEDFLERRLQTQVFK GLAKSIHHAR+LI QRHIRV
Sbjct: 77  IRRLVRLGILDETRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHHARVLIFQRHIRV 136

Query: 464 RKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPXRVKR 577
            KQ+VN+PSF+VRLD+ KHIDF+L SP+GGGRP R KR
Sbjct: 137 GKQIVNVPSFVVRLDTQKHIDFALSSPYGGGRPGRCKR 174


>SPAC19D5.05c |||U3 snoRNP-associated protein Imp3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 183

 Score = 57.2 bits (132), Expect = 2e-09
 Identities = 32/123 (26%), Positives = 57/123 (46%)
 Frame = +2

Query: 131 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGV 310
           +++ ++  Y +  + E  +      + R+ A  L  L+  DP RL   N LL +L  +G+
Sbjct: 28  RDVMVMRRYHISKREEYQKYNIICGKFRQLAHRLSLLDPTDPFRLQYENLLLEKLFDMGI 87

Query: 311 LDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPS 490
           L  K    D      +     RRL   + K  +++ +  A  LI Q H+RV   V+  P+
Sbjct: 88  LPSKSKMSDIENKANVSAICRRRLPVIMCKLRMSQVVSEATRLIEQGHVRVGPHVITDPA 147

Query: 491 FIV 499
           ++V
Sbjct: 148 YLV 150


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 29.1 bits (62), Expect = 0.49
 Identities = 18/44 (40%), Positives = 20/44 (45%)
 Frame = +1

Query: 355  D*GLLGASSADAGVQSWPGEVHPSCQNFDPAKAYSCPQASCEHP 486
            D GLLGA+S   GVQS PG   P      P    + P  S   P
Sbjct: 1521 DYGLLGAASPYKGVQS-PGYTSPFSSAMSPGYGLTSPSYSPSSP 1563


>SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +2

Query: 326 MKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHI 457
           +++D  L + +E FL++   TQ+    +A  I    + I Q H+
Sbjct: 132 VRMDGALWMAVEQFLQQEFDTQILPCLIAPEILLEFLKIWQNHV 175


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = +2

Query: 185  RVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGL 352
            R++YT  R+R  AR+ LT        LF   + L+    + +L++KQ +   +L L
Sbjct: 1566 RLEYTALRLRSYARKTLT-NSASQNALF---SFLKANFDVALLEQKQTETSNLLRL 1617


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,329,795
Number of Sequences: 5004
Number of extensions: 46081
Number of successful extensions: 118
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)