Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_F15
(579 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.) 293 7e-80
SB_53825| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 2e-07
SB_25666| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.39
SB_46290| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-33) 30 1.2
SB_34026| Best HMM Match : PLDc (HMM E-Value=0.063) 29 2.7
SB_44438| Best HMM Match : Phosphorylase (HMM E-Value=1e-22) 29 3.6
SB_24053| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_25478| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_30413| Best HMM Match : WSC (HMM E-Value=2.4) 28 6.3
SB_15605| Best HMM Match : p450 (HMM E-Value=1.4013e-45) 28 6.3
SB_59116| Best HMM Match : TPR_1 (HMM E-Value=6.7e-15) 28 6.3
SB_48008| Best HMM Match : M (HMM E-Value=0.0068) 28 6.3
SB_45792| Best HMM Match : RVT_1 (HMM E-Value=3.5e-26) 27 8.4
SB_3438| Best HMM Match : RVT_1 (HMM E-Value=1.3e-30) 27 8.4
>SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 190
Score = 293 bits (719), Expect = 7e-80
Identities = 140/158 (88%), Positives = 150/158 (94%)
Frame = +2
Query: 104 RPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNAL 283
RPFEK RL+QELKIIGEYGLRNKREVWRVK TLA+IRKAARELLTLEEKDP+RLFEGNAL
Sbjct: 15 RPFEKERLNQELKIIGEYGLRNKREVWRVKLTLAKIRKAARELLTLEEKDPRRLFEGNAL 74
Query: 284 LRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRV 463
LRRLVRIGVLDE + KLDYVLGL+IEDFLERRLQTQVFK GLAKSIHHAR+LIRQRHIRV
Sbjct: 75 LRRLVRIGVLDESRKKLDYVLGLRIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRV 134
Query: 464 RKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPXRVKR 577
RKQ+VN+PSF+VRLDS KHIDFSL SP+GGGRP RVKR
Sbjct: 135 RKQLVNVPSFVVRLDSQKHIDFSLNSPYGGGRPGRVKR 172
>SB_53825| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 182
Score = 52.8 bits (121), Expect = 2e-07
Identities = 30/123 (24%), Positives = 61/123 (49%)
Frame = +2
Query: 131 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGV 310
+E+K++ +Y ++ + + + I+ A ++ L+ KDP R+ +L +L +G+
Sbjct: 28 REVKVLRKYHIQKREDYTKYNKLSGLIKSLANKIKDLDPKDPYRVEATEQILEKLHNMGL 87
Query: 311 LDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPS 490
+ K+ L + F RRL + +A+ + A I Q H+RV +V+ P+
Sbjct: 88 ISTKK-NLGQCNKVNASSFCRRRLPVVMVNLKMAQVVKDAVKYIEQGHVRVGPEVIMDPA 146
Query: 491 FIV 499
F+V
Sbjct: 147 FLV 149
>SB_25666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 128
Score = 31.9 bits (69), Expect = 0.39
Identities = 19/52 (36%), Positives = 25/52 (48%)
Frame = +2
Query: 104 RPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPK 259
RP K L Q+ +G+YG KR+ V AARE+L +E PK
Sbjct: 58 RPLGKELLSQQFSDVGKYGRIYKRKFPTVNIVDIADPSAAREVLGIETLGPK 109
>SB_46290| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-33)
Length = 1019
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -1
Query: 183 HTSRLLRRPYSPMIFNSWSRRAFSKGRXRCHVR 85
H S + R P +SW AFSK + RCHVR
Sbjct: 303 HASPVPRDEPPPKPGHSWRIDAFSKRKHRCHVR 335
>SB_34026| Best HMM Match : PLDc (HMM E-Value=0.063)
Length = 499
Score = 29.1 bits (62), Expect = 2.7
Identities = 20/73 (27%), Positives = 36/73 (49%)
Frame = -2
Query: 365 SPQSSDQAHNRVSSVFHPVLQYEPDDVEGHYLRTISWGPSPRG*GAHEQPYGYERACI*R 186
SP+ +D H VSSV LQ DD H L+ ++ PS +++ + + +
Sbjct: 219 SPEVADFFHELVSSVSDISLQLHKDDTT-HMLKDFAFHPSE----SNKTEFITKATERLK 273
Query: 185 AILHACCGDRTLR 147
++H+C G + +R
Sbjct: 274 TLVHSCSGKKAIR 286
>SB_44438| Best HMM Match : Phosphorylase (HMM E-Value=1e-22)
Length = 398
Score = 28.7 bits (61), Expect = 3.6
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
Frame = +2
Query: 209 IRKAARELLTLEEKDPKRL-------FEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDF 367
+ K R T EKDPKR+ + G AL ++ +G+ E + Y LGL +E+
Sbjct: 100 VGKWIRTQQTYYEKDPKRVYYLSLEYYMGRALSNTMINLGIQGECD-EAAYQLGLDMEEL 158
Query: 368 LERRLQTQVFKAGLAK 415
E + GL +
Sbjct: 159 EEMEEDAGLGNGGLGR 174
>SB_24053| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2557
Score = 28.7 bits (61), Expect = 3.6
Identities = 33/133 (24%), Positives = 60/133 (45%), Gaps = 11/133 (8%)
Frame = +2
Query: 161 LRNKREVWRVKYTLARIRKAARELLTLE--EKDPKR--LFEGNA--LLRRLVRIGVL--D 316
L N E W + AR+R+ +L+ L+ +KD KR + E A L+ R + D
Sbjct: 1180 LTNTAEAWTQEQREARLRELKDKLVALDPADKDQKRSVMLEAAAIKLVSRKAHLAKSRED 1239
Query: 317 EKQMKLDYVLGLKIEDF-LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQ--VVNIP 487
++ D V+ I D E+ +++ A + + I +++ HI R Q + N+
Sbjct: 1240 GSEVPRDEVMISLIADLQQEQDKESEGVLASMQEKDKDGLIALQKEHIAARAQDTLANVR 1299
Query: 488 SFIVRLDSGKHID 526
+ + R + G D
Sbjct: 1300 AVLTRGEEGVAAD 1312
>SB_25478| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 75
Score = 28.3 bits (60), Expect = 4.8
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = +2
Query: 215 KAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKL 334
++A ELL EK+ KRL E NA L R V++ +++KL
Sbjct: 24 RSAAELLDKSEKERKRLSEKNAQLTINERDLVMELERLKL 63
>SB_30413| Best HMM Match : WSC (HMM E-Value=2.4)
Length = 259
Score = 27.9 bits (59), Expect = 6.3
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -2
Query: 482 CSQLACGHEYAFAGSKFWHDGWTSP 408
C++LA Y++ G +FW + W+ P
Sbjct: 72 CARLAEQKNYSYFGVQFWGECWSGP 96
>SB_15605| Best HMM Match : p450 (HMM E-Value=1.4013e-45)
Length = 454
Score = 27.9 bits (59), Expect = 6.3
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +2
Query: 116 KARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPK 259
K L Q+ +G+YG KR+ V AARE+L +E PK
Sbjct: 2 KELLSQQFSDVGKYGRIYKRKFPTVNIVDIADPSAAREVLGIETLGPK 49
>SB_59116| Best HMM Match : TPR_1 (HMM E-Value=6.7e-15)
Length = 884
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +2
Query: 293 LVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARIL 439
L++I D+K M+ +Y+LGL +E +R +++ + K H R L
Sbjct: 806 LLQILTQDDKNMEAEYLLGLILERQGKRLEAMKLYMDVIRKDTSHVRAL 854
>SB_48008| Best HMM Match : M (HMM E-Value=0.0068)
Length = 1068
Score = 27.9 bits (59), Expect = 6.3
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Frame = +2
Query: 56 TTEYRRYFQRRT*HLXRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL 235
T++YR Q + R L+ ++KI+ E+ K+E+ +K + + ELL
Sbjct: 543 TSKYRDLLQGENTLVSRSVAVDSLEADVKILREHESELKKEMTSLKERNHNLEQMLNELL 602
Query: 236 -------TLEEKDPKRLFEGNALLRRLVRI 304
T+ E P R E N + R+L +
Sbjct: 603 AKDSGQQTVGESSPARQEEINRISRKLATL 632
>SB_45792| Best HMM Match : RVT_1 (HMM E-Value=3.5e-26)
Length = 600
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -3
Query: 484 DVHNLLADTNMPLPDQNSGMMDGLRQASFEHLRLQTTLQEVLN 356
D+ + A MP P +G+ D + Q +FE +++ T VL+
Sbjct: 381 DLEKVKAICEMPQPVDIAGVQDLIAQEAFEKIKMMITKAPVLH 423
>SB_3438| Best HMM Match : RVT_1 (HMM E-Value=1.3e-30)
Length = 1405
Score = 27.5 bits (58), Expect = 8.4
Identities = 17/63 (26%), Positives = 34/63 (53%)
Frame = +2
Query: 266 FEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIR 445
F G A+ + G+L + LD ++G K ED+ +RRL+ ++ K A++ ++
Sbjct: 1139 FRGEAITFKATTAGILATLEHCLD-LMG-KREDYWQRRLEREIEKRKKAEASVKESVVSA 1196
Query: 446 QRH 454
++H
Sbjct: 1197 KKH 1199
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,233,599
Number of Sequences: 59808
Number of extensions: 379919
Number of successful extensions: 947
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -