Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_F15
(579 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69302-5|CAA93262.1| 189|Caenorhabditis elegans Hypothetical pr... 289 7e-79
U97189-6|AAC48162.1| 183|Caenorhabditis elegans Hypothetical pr... 44 1e-04
Z78063-3|CAB01502.1| 236|Caenorhabditis elegans Hypothetical pr... 29 1.8
AC006790-9|AAF60735.1| 382|Caenorhabditis elegans Hypothetical ... 29 2.4
U58749-10|AAK18879.1| 465|Caenorhabditis elegans Temporarily as... 29 3.2
AC024867-3|AAK68601.2| 327|Caenorhabditis elegans Eukaryotic in... 28 4.2
Z69884-1|CAA93748.1| 313|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z48795-7|CAA88731.1| 347|Caenorhabditis elegans Hypothetical pr... 27 7.3
U39652-5|AAV28338.1| 986|Caenorhabditis elegans Hypothetical pr... 27 7.3
U39652-4|AAV28337.1| 1122|Caenorhabditis elegans Hypothetical pr... 27 7.3
AC024801-9|AAF59653.3| 791|Caenorhabditis elegans Hypothetical ... 27 7.3
U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated p... 27 9.6
U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated p... 27 9.6
AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin... 27 9.6
AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectr... 27 9.6
AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectr... 27 9.6
AF036706-17|AAK39277.2| 582|Caenorhabditis elegans Enhanced rna... 27 9.6
>Z69302-5|CAA93262.1| 189|Caenorhabditis elegans Hypothetical
protein F40F8.10 protein.
Length = 189
Score = 289 bits (710), Expect = 7e-79
Identities = 136/158 (86%), Positives = 151/158 (95%)
Frame = +2
Query: 104 RPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNAL 283
RPFEK RLDQELK+IG +GL+NKREVWRVKYTLA++RKAARELLTLE+KDPKRLFEGNAL
Sbjct: 17 RPFEKERLDQELKLIGTFGLKNKREVWRVKYTLAKVRKAARELLTLEDKDPKRLFEGNAL 76
Query: 284 LRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRV 463
LRRLV+IGVLDE +MKLDYVLGLK+EDFLERRLQTQVFK GLAKSIHHARILI+Q HIRV
Sbjct: 77 LRRLVKIGVLDETKMKLDYVLGLKVEDFLERRLQTQVFKLGLAKSIHHARILIKQHHIRV 136
Query: 464 RKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPXRVKR 577
R+QVV++PSFIVRLDS KHIDFSL+SP+GGGRP RVKR
Sbjct: 137 RRQVVDVPSFIVRLDSQKHIDFSLQSPYGGGRPGRVKR 174
>U97189-6|AAC48162.1| 183|Caenorhabditis elegans Hypothetical
protein C48B6.2 protein.
Length = 183
Score = 43.6 bits (98), Expect = 1e-04
Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 1/125 (0%)
Frame = +2
Query: 170 KREVWRVKYTLA-RIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVL 346
KRE + + TLA + R+ A + L E DP R +L + G++ L+ +
Sbjct: 40 KREHYALYNTLAAKSREVADLIKNLSESDPFRSKCTEDMLTKFYAAGLVPTSDT-LERIG 98
Query: 347 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHID 526
+ F RRL + G+ +S+ A L+ Q H+R+ ++V P+F+V S I
Sbjct: 99 KVTGASFARRRLPVVMRNIGMCESVKTASDLVEQGHVRIGTKLVTDPAFMVTRSSEDMIT 158
Query: 527 FSLKS 541
++ S
Sbjct: 159 WTKAS 163
>Z78063-3|CAB01502.1| 236|Caenorhabditis elegans Hypothetical
protein F45D3.3 protein.
Length = 236
Score = 29.5 bits (63), Expect = 1.8
Identities = 23/60 (38%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Frame = +1
Query: 319 KTDETRLCAWSE---D*GLLGASSADAGVQSWPGEVHPSCQNFDPAKAYSCPQASCEHPI 489
KTDE A S+ D G +SA A V + P + S NFD K SC C PI
Sbjct: 107 KTDEIVESAESDSSSDTDYFGEASASAPVSN-PALTYLSGANFDNVKQPSCQMLGCTGPI 165
>AC006790-9|AAF60735.1| 382|Caenorhabditis elegans Hypothetical
protein Y49F6B.9 protein.
Length = 382
Score = 29.1 bits (62), Expect = 2.4
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -2
Query: 482 CSQLACGHEYAFAGSKFWHDG 420
C + CG E+ F K WH+G
Sbjct: 152 CQRPGCGREFCFKCRKVWHEG 172
>U58749-10|AAK18879.1| 465|Caenorhabditis elegans Temporarily
assigned gene nameprotein 224 protein.
Length = 465
Score = 28.7 bits (61), Expect = 3.2
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -2
Query: 485 GCSQLACGHEYAFAGSKFWH 426
GC +L +EY FA K WH
Sbjct: 339 GCDELIFANEYTFAEEKSWH 358
>AC024867-3|AAK68601.2| 327|Caenorhabditis elegans Eukaryotic
initiation factor protein3.I protein.
Length = 327
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = -2
Query: 380 DDAPRSPQSSDQAHNRVSSVFHPVLQYEPDDVEGHY--LRTISWGPS 246
+DA + Q+S A + + ++H V + E +GH+ + T++W PS
Sbjct: 252 EDAMQVTQTSVSAGHFEAKIYHMVFEEEFARFKGHFGPINTMAWHPS 298
>Z69884-1|CAA93748.1| 313|Caenorhabditis elegans Hypothetical
protein F31F6.1 protein.
Length = 313
Score = 27.9 bits (59), Expect = 5.5
Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 5/101 (4%)
Frame = +2
Query: 152 EYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFE---GNALLRRLV-RIGVLDE 319
E G +R + LAR + R TL EKD +++F+ G ++R++ R G LD+
Sbjct: 106 ECGKMKSVSQFRTVFHLARCKLGNRMSPTLIEKDFEKIFQQYFGMLSMQRVLGRTGTLDQ 165
Query: 320 KQMKLDYVLGLKIEDFLERRLQTQV-FKAGLAKSIHHARIL 439
K + + E+ R L T V G + H R+L
Sbjct: 166 LFAKCSFEELMPAENV--RSLGTPVELSGGSVTVLPHRRVL 204
>Z48795-7|CAA88731.1| 347|Caenorhabditis elegans Hypothetical
protein R05H5.1 protein.
Length = 347
Score = 27.5 bits (58), Expect = 7.3
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2
Query: 95 VTYVFENTDGTLLFTILASSH 33
+ YVF+N+D LLF IL H
Sbjct: 160 LVYVFDNSDSDLLFQILTRVH 180
>U39652-5|AAV28338.1| 986|Caenorhabditis elegans Hypothetical
protein R07E4.1b protein.
Length = 986
Score = 27.5 bits (58), Expect = 7.3
Identities = 10/42 (23%), Positives = 28/42 (66%)
Frame = +2
Query: 353 KIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 478
++EDFLE+ ++ ++ ++ ++I H+R LI+ + ++ ++
Sbjct: 164 QMEDFLEKTVRPRMLQSVSVEAISHSRALIQFNYKEPQQSII 205
>U39652-4|AAV28337.1| 1122|Caenorhabditis elegans Hypothetical
protein R07E4.1a protein.
Length = 1122
Score = 27.5 bits (58), Expect = 7.3
Identities = 10/42 (23%), Positives = 28/42 (66%)
Frame = +2
Query: 353 KIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 478
++EDFLE+ ++ ++ ++ ++I H+R LI+ + ++ ++
Sbjct: 300 QMEDFLEKTVRPRMLQSVSVEAISHSRALIQFNYKEPQQSII 341
>AC024801-9|AAF59653.3| 791|Caenorhabditis elegans Hypothetical
protein Y50D7A.1 protein.
Length = 791
Score = 27.5 bits (58), Expect = 7.3
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -1
Query: 579 FLLTRXGRPPPNGDFREKSMCLPESRRT 496
F + G+ P N DF +K +C P R T
Sbjct: 481 FFFRKKGQKPENIDFSKKKLCAPLVRAT 508
>U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated
protein 70, isoform a protein.
Length = 2257
Score = 27.1 bits (57), Expect = 9.6
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 6/33 (18%)
Frame = +1
Query: 412 EVHPSCQNFDP------AKAYSCPQASCEHPII 492
+VH QNFD AKA S PQ + EHP I
Sbjct: 778 DVHDELQNFDQHIKVLHAKAESLPQEAREHPDI 810
>U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated
protein 70, isoform b protein.
Length = 2302
Score = 27.1 bits (57), Expect = 9.6
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 6/33 (18%)
Frame = +1
Query: 412 EVHPSCQNFDP------AKAYSCPQASCEHPII 492
+VH QNFD AKA S PQ + EHP I
Sbjct: 778 DVHDELQNFDQHIKVLHAKAESLPQEAREHPDI 810
>AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin
protein.
Length = 2257
Score = 27.1 bits (57), Expect = 9.6
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 6/33 (18%)
Frame = +1
Query: 412 EVHPSCQNFDP------AKAYSCPQASCEHPII 492
+VH QNFD AKA S PQ + EHP I
Sbjct: 778 DVHDELQNFDQHIKVLHAKAESLPQEAREHPDI 810
>AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectrin
protein.
Length = 2257
Score = 27.1 bits (57), Expect = 9.6
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 6/33 (18%)
Frame = +1
Query: 412 EVHPSCQNFDP------AKAYSCPQASCEHPII 492
+VH QNFD AKA S PQ + EHP I
Sbjct: 778 DVHDELQNFDQHIKVLHAKAESLPQEAREHPDI 810
>AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectrin
protein.
Length = 2302
Score = 27.1 bits (57), Expect = 9.6
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 6/33 (18%)
Frame = +1
Query: 412 EVHPSCQNFDP------AKAYSCPQASCEHPII 492
+VH QNFD AKA S PQ + EHP I
Sbjct: 778 DVHDELQNFDQHIKVLHAKAESLPQEAREHPDI 810
>AF036706-17|AAK39277.2| 582|Caenorhabditis elegans Enhanced rnai
(rna interference)protein 1, isoform b protein.
Length = 582
Score = 27.1 bits (57), Expect = 9.6
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = +2
Query: 317 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQ 472
EK +Y+ + EDF + + +FK G KS AR +I + V +
Sbjct: 427 EKMAIREYLENKQTEDFAKIAAERGIFKIGEIKSYQTARPIIEDDDVDVESE 478
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,154,918
Number of Sequences: 27780
Number of extensions: 275116
Number of successful extensions: 811
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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