Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_F13
         (593 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar...   197   9e-52
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha...   193   2e-50
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    30   0.22 
SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase ...    27   1.6  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    27   2.1  
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   6.3  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    25   8.3  

>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 189

 Score =  197 bits (481), Expect = 9e-52
 Identities = 96/179 (53%), Positives = 128/179 (71%)
 Frame = +3

Query: 51  NQKVKIPDGLTVHVKXRLVTDKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELA 230
           ++ + IP+G++V +K RLVT KGPRGVLK+N + + ++++      +K   W GS+K  A
Sbjct: 8   DETLTIPEGVSVDIKARLVTVKGPRGVLKQNLRRVDIELKKQG-NTIKFIVWHGSRKHNA 66

Query: 231 AVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIXXVKM 410
            +RT  S + NMI GVT+GF+YKMR VYAHFPIN   TE  +++EIRNFLGE+    +K 
Sbjct: 67  CIRTAYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRVIKC 126

Query: 411 APGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSXKTTV 587
            PGVTV  S   KDE+IIEGNSLE+VS SAA I+Q   V+NKDIRKFLDG+YVS +  +
Sbjct: 127 LPGVTVSISSAVKDEIIIEGNSLENVSQSAANIKQICNVRNKDIRKFLDGIYVSERGNI 185


>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score =  193 bits (470), Expect = 2e-50
 Identities = 94/179 (52%), Positives = 126/179 (70%)
 Frame = +3

Query: 51  NQKVKIPDGLTVHVKXRLVTDKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELA 230
           ++ + IP G+TV +K R VT  GPRG LK+N +H+ ++++      +K   W GS+K  A
Sbjct: 8   DETLTIPKGVTVDIKARNVTVTGPRGTLKQNLRHVDIEMKKQG-NTIKFIVWHGSRKHNA 66

Query: 231 AVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIXXVKM 410
            +R+V S + NMI GVT+GF+YKMR VYAHFPIN   TE  +++EIRNFLGE+    +K 
Sbjct: 67  CIRSVYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRVIKC 126

Query: 411 APGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSXKTTV 587
            PGVTV  S   KDE+I+EGNSLE+VS SAA I+Q   V+NKDIRKFLDG+YVS +  +
Sbjct: 127 LPGVTVSISSAVKDEIILEGNSLENVSQSAANIKQICNVRNKDIRKFLDGIYVSERGNI 185


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 30.3 bits (65), Expect = 0.22
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
 Frame = +3

Query: 63   KIPDGLTVHVKXRLV--TDKGP-RGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAA 233
            K+PDG+ +      +   +K P    L   F H +VD+ +    L + E WF        
Sbjct: 1564 KVPDGIFLKTSRLPIFEANKAPYNAYLLDFFTHGSVDMLIEQNNLKQSEIWFVLNDFSLV 1623

Query: 234  VRTVCSHVENMIKGVT 281
            + T+CS + N++  VT
Sbjct: 1624 LATICSCLGNLLNLVT 1639


>SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 10/36 (27%), Positives = 24/36 (66%)
 Frame = +3

Query: 477 LEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSXKTT 584
           + D+S+SA    + T + N+++ K  +GL+++ +T+
Sbjct: 78  MSDISNSACRASKITALNNRELYKDDNGLFITVQTS 113


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = +3

Query: 432 NSPKQKDELIIEGNSLEDVSSSAALIQQS 518
           +SPK+K +L ++G  L+ +  + +LI+QS
Sbjct: 249 SSPKEKYQLFMKGIQLKQLEENYSLIEQS 277


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -2

Query: 229 ASSFLDPNHFSTFRRRGFTMRMSTAKC-LKFLLRTPRG 119
           A SFL+P   STF R  F+  +S   C +   LR+P G
Sbjct: 341 AQSFLEPQTRSTFLRYLFSDEVSVKVCHVLKELRSPTG 378


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -1

Query: 239 PHGGKLLFGSEPFLNLQETRVYHANVNSQVFKVPFENSAGP 117
           PH GK    S   +N  E+R   A+V+S   + PF    GP
Sbjct: 127 PHAGKAA-QSAHVMNSTESRPSSAHVSSSYTQKPFAFPLGP 166


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,428,940
Number of Sequences: 5004
Number of extensions: 48585
Number of successful extensions: 130
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)