Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_F13
         (593 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044    221   3e-58
02_01_0029 - 176002-176137,176495-176646,177166-177577,178010-17...   219   1e-57
11_04_0312 - 16259612-16260231,16260264-16262796                       28   6.5  
03_06_0712 - 35683814-35684065,35685296-35685466                       27   8.5  

>09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044
          Length = 190

 Score =  221 bits (540), Expect = 3e-58
 Identities = 104/182 (57%), Positives = 139/182 (76%), Gaps = 1/182 (0%)
 Frame = +3

Query: 45  VANQKVKIPDGLTVHVKXRLVTDKGPRGVLKRNFKHLAVDIRMVNP-RLLKVEKWFGSKK 221
           +A++ ++IP+G+TV V  ++VT +GPRG L RNFKHL +D +++   R L+V+ WFG+++
Sbjct: 5   LASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEGGRKLQVDAWFGTRR 64

Query: 222 ELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIXX 401
            +AA+RT  SHV+N+I GVTKG++YKMR VYAHFPIN   T  N+ IEIRNFLGEK +  
Sbjct: 65  TMAAIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRK 124

Query: 402 VKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSXKT 581
           V M  GVT++ S K KDEL+++GN +E VS SAALI Q   VKNKDIRKFLDG+YVS K 
Sbjct: 125 VDMLEGVTILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSDKG 184

Query: 582 TV 587
           T+
Sbjct: 185 TI 186


>02_01_0029 -
           176002-176137,176495-176646,177166-177577,178010-178126,
           178260-178322,178964-179167,180605-180687,182394-182516,
           182987-183328
          Length = 543

 Score =  219 bits (535), Expect = 1e-57
 Identities = 104/179 (58%), Positives = 135/179 (75%), Gaps = 3/179 (1%)
 Frame = +3

Query: 60  VKIPDGLTVHVKXRLVTDKGPRGVLKRNFKHLAVDIRMVNP---RLLKVEKWFGSKKELA 230
           ++IP G+TVHV  ++VT +GPRG L RNFKHL +D +++     R L+V+ WFG+++ +A
Sbjct: 1   MEIPSGVTVHVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEVEGVRKLQVDAWFGTRRTMA 60

Query: 231 AVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIXXVKM 410
           A+RT  SHV+N+I GVTKG++YKMR VYAHFPIN   T  N+ IEIRNFLGEK +  V M
Sbjct: 61  AIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDM 120

Query: 411 APGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSXKTTV 587
             GVT++ S K KDEL+++GN +E VS SAALI Q   VKNKDIRKFLDG+YVS K T+
Sbjct: 121 LEGVTILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSDKGTI 179


>11_04_0312 - 16259612-16260231,16260264-16262796
          Length = 1050

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 17/79 (21%), Positives = 35/79 (44%)
 Frame = +3

Query: 42  FVANQKVKIPDGLTVHVKXRLVTDKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKK 221
           F+     K+   +  H++  L+ +      L  NF      + +++     +     S K
Sbjct: 538 FINTSIEKLTAPVCEHLQLLLLRNNSSLHELPENFFQSMQQLAVLDMSNSSIHSLLLSTK 597

Query: 222 ELAAVRTVCSHVENMIKGV 278
           +LAAVRT+C +   + +G+
Sbjct: 598 DLAAVRTLCLNDSKVSRGI 616


>03_06_0712 - 35683814-35684065,35685296-35685466
          Length = 140

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = +3

Query: 129 VLKRNF-KHLAVDIRMVNPRLLKVE 200
           VLKR+F +  AVD+R +NP++ K E
Sbjct: 5   VLKRHFSRKRAVDVRRINPKVPKEE 29


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,741,198
Number of Sequences: 37544
Number of extensions: 314982
Number of successful extensions: 672
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)