Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_F13
         (593 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)        157   8e-39
SB_40010| Best HMM Match : No HMM Matches (HMM E-Value=.)              56   2e-08
SB_46518| Best HMM Match : VWA (HMM E-Value=1.6e-07)                   31   0.93 
SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075)               30   1.6  
SB_7938| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.6  
SB_29064| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_1050| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.5  

>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
          Length = 741

 Score =  157 bits (380), Expect = 8e-39
 Identities = 68/124 (54%), Positives = 93/124 (75%)
 Frame = +3

Query: 45  VANQKVKIPDGLTVHVKXRLVTDKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKE 224
           +A++ V IPD + V VK R+VT  GPRG LKRNF+HL +++  V    ++V+ WF S+KE
Sbjct: 561 LASETVTIPDNVEVKVKSRVVTVTGPRGTLKRNFRHLRLELTKVGKDKVRVDVWFASRKE 620

Query: 225 LAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIXXV 404
           LA V+T+ +H+ENMIKGV  G++YKMRAVYAHFPIN    E  +++E+RNFLGEKY+  V
Sbjct: 621 LACVKTIITHIENMIKGVIYGYRYKMRAVYAHFPINIAIQENGTLVEVRNFLGEKYVRRV 680

Query: 405 KMAP 416
           +M P
Sbjct: 681 RMRP 684


>SB_40010| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 34

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 26/30 (86%), Positives = 28/30 (93%)
 Frame = +3

Query: 501 ALIQQSTTVKNKDIRKFLDGLYVSXKTTVV 590
           ALIQQST VKNKDIRKFLDG+YVS KTT+V
Sbjct: 2   ALIQQSTKVKNKDIRKFLDGVYVSEKTTIV 31


>SB_46518| Best HMM Match : VWA (HMM E-Value=1.6e-07)
          Length = 309

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -2

Query: 472 LPSMINSSFCLGELTTVTPGAIFTXXMYFSPKKLRISIIE 353
           +P  I S   LG+L  +T G I T      PKKL   +IE
Sbjct: 218 IPIAIGSKVNLGQLNILTAGPIITANTSGDPKKLANQVIE 257


>SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075)
          Length = 762

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
 Frame = +3

Query: 348 GNSIIEIRNFLGEKYIXXVKMAPGVTVVNSPKQ--KDELIIEGNSLEDVSSSAALIQQST 521
           G  ++ +++ LG++    +      T +       K+EL    +SLE+VS   A +Q S 
Sbjct: 196 GREVVRLKDELGKQASNELSFIAKTTELEDQLVLLKEELNSRVSSLENVSKQLAELQSSA 255

Query: 522 TVKNKDIRKFLDGLYVSXK 578
             K+++I      L V+ K
Sbjct: 256 LTKDEEISSLTKRLQVTEK 274


>SB_7938| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 203

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = -2

Query: 247 QTVLTAASSFLDPNHFSTFRRRGFTMRMSTAKCLKFLLRTPRGPLSVT 104
           QT++T A  F D       RRR F+  +S   C + L R+P  P+S T
Sbjct: 85  QTMITTA--FPDTRKSPLTRRRNFSDGVSDLSCTENLARSPCAPVSPT 130


>SB_29064| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 324

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = -2

Query: 502 AAELETSSKELPSMINSSFCLGELTTVTPGAIFTXXMYFSPKKLRISIIEL 350
           AAE++TS   L  + + S CL     VT   IFT  MY  P+++ ++   L
Sbjct: 234 AAEVKTSRIFLLVINSFSICLAPFMIVTFIEIFTGTMYTVPRQVYLATTNL 284


>SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2834

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 3/94 (3%)
 Frame = +3

Query: 93   KXRLVTDKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMIK 272
            K  L  DK      KR   H+   +  +N +    +K    K+ LAA + V +   N+ K
Sbjct: 910  KRFLTKDKNDFESKKRKLTHV---VDGINTKKELRKKQEDMKRALAAAKVVKTERVNVAK 966

Query: 273  GVTKGFQY-KMRAVYAHFPI--NCVTTEGNSIIE 365
            GVT+G    K R V    PI    V T+G  + +
Sbjct: 967  GVTQGMPVTKGRVVTQGMPITPGRVVTQGKVVTQ 1000


>SB_1050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 674

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -2

Query: 553 KNFLISLFLTVVDCWMRAAELETSSKELPSMINSSFCLGELTTV 422
           K+F+  +   +VDCW+ +   E S+  LPS   S      +TTV
Sbjct: 298 KDFIGRIVPLLVDCWIESNPAEMST-SLPSSSISPVAFSTMTTV 340


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,421,114
Number of Sequences: 59808
Number of extensions: 377295
Number of successful extensions: 848
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)