Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_F13
         (593 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal pro...   227   5e-60
U10401-7|AAA19056.1|  504|Caenorhabditis elegans Hypothetical pr...    31   0.62 
AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical...    31   0.62 
AC006633-1|AAK68374.1|  113|Caenorhabditis elegans Hypothetical ...    29   3.3  
AF125447-1|AAD12807.1|  414|Caenorhabditis elegans Hypothetical ...    27   7.6  

>AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 9 protein.
          Length = 189

 Score =  227 bits (555), Expect = 5e-60
 Identities = 103/181 (56%), Positives = 135/181 (74%)
 Frame = +3

Query: 48  ANQKVKIPDGLTVHVKXRLVTDKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKEL 227
           +N  V  P+G+T  VK R+V   GPRG ++++F+HL +++  +    L+V KWFG +KEL
Sbjct: 6   SNDTVVFPEGVTFTVKNRIVHVTGPRGTIRKDFRHLHMEMERIGKSTLRVRKWFGVRKEL 65

Query: 228 AAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIXXVK 407
           AA+RTVCSH++NMIKGVT GF+YKMR+VYAHFPIN    +GN  +EIRNFLGEK +  V 
Sbjct: 66  AAIRTVCSHIKNMIKGVTVGFRYKMRSVYAHFPINVTLQDGNRTVEIRNFLGEKIVRRVP 125

Query: 408 MAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSXKTTV 587
           +  GV    S  QKDE+++EGN ++ VS +AA IQQST VK KDIRKFLDG+YVS KTT+
Sbjct: 126 LPEGVIATISTAQKDEIVVEGNDVQFVSQAAARIQQSTAVKEKDIRKFLDGIYVSEKTTI 185

Query: 588 V 590
           V
Sbjct: 186 V 186


>U10401-7|AAA19056.1|  504|Caenorhabditis elegans Hypothetical
           protein T20B12.3 protein.
          Length = 504

 Score = 31.1 bits (67), Expect = 0.62
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -2

Query: 283 LVTPLIMFSTCEQTVLTAASSFLDPNHFSTFRRRGFTMRMSTAKCL 146
           L  P +++ + ++++LT   SFL   H  T+    F  R+S  +CL
Sbjct: 275 LTNPSLLYMSQKESILTLLDSFLSSTHLPTYITASFLKRLS--RCL 318


>AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical
           protein Y47G6A.29 protein.
          Length = 2460

 Score = 31.1 bits (67), Expect = 0.62
 Identities = 17/63 (26%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
 Frame = +3

Query: 150 HLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVC---SHVENMIKGVT--KGFQYKMRAVY 314
           H+  D++++  +   ++ WF   ++L ++RT C   S ++  I  +T  KGF + M+A +
Sbjct: 361 HVKHDVKIILTKETCMDIWFMRGEQLESIRTRCGPLSSLDMSILWITTEKGFYWNMKAEF 420

Query: 315 AHF 323
            +F
Sbjct: 421 LNF 423


>AC006633-1|AAK68374.1|  113|Caenorhabditis elegans Hypothetical
           protein F35B3.3 protein.
          Length = 113

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = -1

Query: 590 HNSCFXRYIKTIQELSDILILDCSRLLDESSRARDIFQ 477
           +N+C  R IK +  L+ +L  + SRL +  SR RD+F+
Sbjct: 25  NNNCKLRQIKPVPNLTRLL--EESRLTNSLSRLRDVFK 60


>AF125447-1|AAD12807.1|  414|Caenorhabditis elegans Hypothetical
           protein Y14H12B.2 protein.
          Length = 414

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 26  PNMKQICSKSESQNPRRAYGPCE 94
           P MKQI  K+E Q PR  Y P +
Sbjct: 193 PKMKQIAVKTEFQEPRIDYPPSD 215


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,515,138
Number of Sequences: 27780
Number of extensions: 276947
Number of successful extensions: 657
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)