Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_F12
         (412 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58485| Best HMM Match : COX2 (HMM E-Value=0)                        74   5e-14
SB_14168| Best HMM Match : COX2 (HMM E-Value=0)                        74   5e-14
SB_12233| Best HMM Match : COX2 (HMM E-Value=0)                        74   5e-14

>SB_58485| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 239

 Score = 73.7 bits (173), Expect = 5e-14
 Identities = 34/81 (41%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
 Frame = +2

Query: 122 PAFTLIFIAXXXXXXXXXXXXXXXXXITLKSIGHQ*Y*RYEYSDFNN--IEFDSYIIPSN 295
           PA  LIFIA                 +T+K++GHQ Y  YEYSD+ +  +EFDSY++P+ 
Sbjct: 77  PAIILIFIAFPSLKLLYLMDEVMDPALTIKAVGHQWYWSYEYSDYQSETLEFDSYMVPTT 136

Query: 296 EIKNNEFRLLXVXNRIILPIN 358
           ++   +FRLL V NR+++PIN
Sbjct: 137 DLNQGDFRLLEVDNRLVVPIN 157


>SB_14168| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 239

 Score = 73.7 bits (173), Expect = 5e-14
 Identities = 34/81 (41%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
 Frame = +2

Query: 122 PAFTLIFIAXXXXXXXXXXXXXXXXXITLKSIGHQ*Y*RYEYSDFNN--IEFDSYIIPSN 295
           PA  LIFIA                 +T+K++GHQ Y  YEYSD+ +  +EFDSY++P+ 
Sbjct: 77  PAIILIFIAFPSLKLLYLMDEVMDPALTIKAVGHQWYWSYEYSDYQSETLEFDSYMVPTT 136

Query: 296 EIKNNEFRLLXVXNRIILPIN 358
           ++   +FRLL V NR+++PIN
Sbjct: 137 DLNQGDFRLLEVDNRLVVPIN 157


>SB_12233| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 219

 Score = 73.7 bits (173), Expect = 5e-14
 Identities = 34/81 (41%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
 Frame = +2

Query: 122 PAFTLIFIAXXXXXXXXXXXXXXXXXITLKSIGHQ*Y*RYEYSDFNN--IEFDSYIIPSN 295
           PA  LIFIA                 +T+K++GHQ Y  YEYSD+ +  +EFDSY++P+ 
Sbjct: 77  PAIILIFIAFPSLKLLYLMDEVMDPALTIKAVGHQWYWSYEYSDYQSETLEFDSYMVPTT 136

Query: 296 EIKNNEFRLLXVXNRIILPIN 358
           ++   +FRLL V NR+++PIN
Sbjct: 137 DLNQGDFRLLEVDNRLVVPIN 157


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,631,826
Number of Sequences: 59808
Number of extensions: 94224
Number of successful extensions: 169
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 752487277
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)