Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_F09
         (617 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    28   0.072
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   4.7  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   4.7  
AJ845189-1|CAH60166.1|  515|Tribolium castaneum putative esteras...    22   4.7  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    21   6.3  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 27.9 bits (59), Expect = 0.072
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = -3

Query: 360 SNGLKVARGLQLVDTMALGLAISGTLSNWTLAATTSHTDSEYNITLFSTV 211
           +NG+ + R  + V T+++    S  + N+T  A+ S + + Y  +LF  V
Sbjct: 648 TNGIVINRASKRVSTLSIDNVQSTHVGNYTCLASNSASVTTYTTSLFINV 697


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 534 DAWSDFGWSQLP 569
           D WS F W+ LP
Sbjct: 915 DQWSSFYWNLLP 926


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 534 DAWSDFGWSQLP 569
           D WS F W+ LP
Sbjct: 915 DQWSSFYWNLLP 926


>AJ845189-1|CAH60166.1|  515|Tribolium castaneum putative esterase
           protein.
          Length = 515

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 117 KTHNIAQFFPIQLLNISVGTHLS 49
           + H +   FPI L  ISV T L+
Sbjct: 386 RQHAVTAKFPIYLYRISVETKLN 408


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 28  ARRMPQAAKMGAY 66
           ++R+PQ AK GAY
Sbjct: 286 SQRVPQLAKNGAY 298


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,113
Number of Sequences: 336
Number of extensions: 3346
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15770591
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)