Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_F09
(617 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0228 - 22137771-22138016,22138109-22138306,22138852-221390... 203 8e-53
05_03_0257 + 11145558-11145876,11148181-11148347,11149114-111493... 201 3e-52
06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687 31 0.009
05_02_0037 + 5883285-5884292 31 0.55
03_05_0826 - 27994004-27994966,27995053-27996030,27996101-27996478 30 1.3
09_06_0328 + 22365308-22365415,22365743-22366018,22366166-223664... 29 3.9
04_03_0673 - 18562497-18563010,18563080-18563471,18563553-185636... 27 9.0
02_02_0677 + 12859101-12859413,12862450-12862817 27 9.0
>03_05_0228 -
22137771-22138016,22138109-22138306,22138852-22139018,
22139129-22139132
Length = 204
Score = 203 bits (496), Expect = 8e-53
Identities = 97/185 (52%), Positives = 120/185 (64%), Gaps = 1/185 (0%)
Frame = +1
Query: 55 MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXX 234
MGAY+Y+ EL+R+K SDVMRF+ RVR W+YRQ + R RPTRPDKARRLGY+AKQ
Sbjct: 1 MGAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYV 60
Query: 235 XXXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYW 414
YGKPK G+ QLK RN +S+AEE +SYW
Sbjct: 61 VYRVRVRRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYW 120
Query: 415 VAQXSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGRSSRGL-GKGHX 591
V + S+YKYFE+ILVD +H AIR DP+INW+ VHKHRE+RGLTSAG+ RGL GKGH
Sbjct: 121 VNEDSTYKYFEIILVDVAHSAIRNDPRINWLCKPVHKHRELRGLTSAGKKYRGLRGKGHT 180
Query: 592 YSQTK 606
+ + +
Sbjct: 181 HHKAR 185
>05_03_0257 +
11145558-11145876,11148181-11148347,11149114-11149311,
11149405-11149650
Length = 309
Score = 201 bits (491), Expect = 3e-52
Identities = 96/184 (52%), Positives = 119/184 (64%), Gaps = 1/184 (0%)
Frame = +1
Query: 58 GAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXXX 237
GAY+Y+ EL+R+K SDVMRF+ RVR W+YRQ + R RPTRPDKARRLGY+AKQ
Sbjct: 107 GAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYVV 166
Query: 238 XXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWV 417
YGKPK G+ QLK RN +S+AEE +SYWV
Sbjct: 167 YRVRVRRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYWV 226
Query: 418 AQXSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGRSSRGL-GKGHXY 594
+ S+YKYFE+ILVD +H AIR DP+INW+ VHKHRE+RGLTSAG+ RGL GKGH +
Sbjct: 227 NEDSTYKYFEIILVDVAHSAIRNDPRINWLCKPVHKHRELRGLTSAGKKYRGLRGKGHTH 286
Query: 595 SQTK 606
+ +
Sbjct: 287 HKAR 290
>06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687
Length = 353
Score = 31.5 bits (68), Expect(2) = 0.009
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +1
Query: 442 FEVILVDPSHKAIRRDPK 495
FE+ILVD +H AIR DPK
Sbjct: 299 FEIILVDVAHSAIRDDPK 316
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +3
Query: 495 DQLDRECCT*ASRDAWSDFGWSQLP 569
DQL + C A R WS W Q+P
Sbjct: 317 DQLALQACAQARRAPWSHLCWQQVP 341
Score = 25.0 bits (52), Expect(2) = 0.009
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +1
Query: 295 YGKPKSHGVNQLKPTRN 345
Y KPK G+ QLK RN
Sbjct: 276 YSKPKHQGITQLKFQRN 292
>05_02_0037 + 5883285-5884292
Length = 335
Score = 31.5 bits (68), Expect = 0.55
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Frame = +3
Query: 138 AVPSVDSYAPRSQAHKAGQSPKTRLP---C*TRLCCIQNPCATWWPQASSC*GC 290
AV ++ AP ++ +A +SP C R CC +P + WWP+ GC
Sbjct: 271 AVFPTEAAAPATEGKEAAKSPDAAAQGGWCLFR-CCWPSPPSVWWPRCGCGGGC 323
>03_05_0826 - 27994004-27994966,27995053-27996030,27996101-27996478
Length = 772
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = -3
Query: 354 GLKVARGLQLVDTMALGLAISGTLSNWTLAATTSHTDSE 238
G +V G++ V +ALGL ++GT W L T +D++
Sbjct: 591 GSEVPLGVEKVHELALGLELAGTRFLWALRKPTGVSDAD 629
>09_06_0328 +
22365308-22365415,22365743-22366018,22366166-22366417,
22366542-22366939,22367028-22368021,22368199-22368409,
22368515-22368749,22368874-22368996,22369190-22369310,
22369416-22369625
Length = 975
Score = 28.7 bits (61), Expect = 3.9
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 21 GTRETYATGC*DGCLQIYS 77
G +A GC DGCLQ+Y+
Sbjct: 661 GNANFWAVGCEDGCLQVYT 679
>04_03_0673 -
18562497-18563010,18563080-18563471,18563553-18563649,
18563977-18564149,18564349-18564485,18564806-18564872
Length = 459
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +3
Query: 261 WPQASSC*G-CHLWQAQEPWCQPVEAH 338
WPQ CHL Q +EPW ++AH
Sbjct: 46 WPQDQRWYQHCHLQQEEEPWRCQIKAH 72
>02_02_0677 + 12859101-12859413,12862450-12862817
Length = 226
Score = 27.5 bits (58), Expect = 9.0
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +1
Query: 418 AQXSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGRS 564
A Y F +++D H+ IR + V AV KH +M GRS
Sbjct: 101 ASLMGYSLFLALVIDRLHQYIRELRGLKKNVEAVTKHNKMLEEAKHGRS 149
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,868,081
Number of Sequences: 37544
Number of extensions: 382974
Number of successful extensions: 950
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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