Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_F09
(617 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U88168-3|AAC24397.1| 204|Caenorhabditis elegans Ribosomal prote... 226 9e-60
AL132943-1|CAC14390.1| 1042|Caenorhabditis elegans Hypothetical ... 30 1.5
AL117202-13|CAB55075.1| 580|Caenorhabditis elegans Hypothetical... 29 2.0
U46675-3|AAB52643.1| 375|Caenorhabditis elegans Activated in bl... 28 4.6
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch... 28 6.1
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch... 28 6.1
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 28 6.1
Z46828-1|CAA86856.1| 542|Caenorhabditis elegans Hypothetical pr... 27 8.1
U55857-5|AAA98031.1| 602|Caenorhabditis elegans Hypothetical pr... 27 8.1
>U88168-3|AAC24397.1| 204|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 15 protein.
Length = 204
Score = 226 bits (553), Expect = 9e-60
Identities = 102/185 (55%), Positives = 128/185 (69%)
Frame = +1
Query: 55 MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXX 234
MGAY+Y+QE++RKK SD +R+LLR+R W YRQL+ +HR PRPTRP+KARRLGYRAKQ
Sbjct: 1 MGAYKYMQEIWRKKQSDALRYLLRIRTWHYRQLSAVHRVPRPTRPEKARRLGYRAKQGFV 60
Query: 235 XXXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYW 414
TYGKPK+HGVN+LK ++ Q++AE +SYW
Sbjct: 61 VYRVRVRRGNRKRPVCKGQTYGKPKTHGVNELKNAKSKQAVAEGRAGRRLGSLRVLNSYW 120
Query: 415 VAQXSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGRSSRGLGKGHXY 594
VA+ S+YK++EV+L+DP HKAIRR+P WI VHKHRE RGLTSAGR SRGLGKG +
Sbjct: 121 VAEDSTYKFYEVVLIDPFHKAIRRNPDTQWITKPVHKHREQRGLTSAGRKSRGLGKGWRF 180
Query: 595 SQTKG 609
S T+G
Sbjct: 181 SATRG 185
>AL132943-1|CAC14390.1| 1042|Caenorhabditis elegans Hypothetical
protein Y116F11B.3 protein.
Length = 1042
Score = 29.9 bits (64), Expect = 1.5
Identities = 19/46 (41%), Positives = 27/46 (58%)
Frame = -3
Query: 354 GLKVARGLQLVDTMALGLAISGTLSNWTLAATTSHTDSEYNITLFS 217
GLKVAR LVD +G+ + G ++ T ATT+ + Y TL+S
Sbjct: 972 GLKVAR--DLVD-QNIGVWLGGQVNITTTTATTTSNSTSYPSTLYS 1014
>AL117202-13|CAB55075.1| 580|Caenorhabditis elegans Hypothetical
protein Y47D3A.16 protein.
Length = 580
Score = 29.5 bits (63), Expect = 2.0
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = -3
Query: 204 SSGFVRPCGPGSAVHTS---QLTVLPYPHTQQKTHNIAQFFPIQLLNISVGTH 55
S+ RP GS+ T V+ PHT T N F + LLN+S+ H
Sbjct: 526 STTTTRPSNVGSSASTPIPLPKRVIKLPHTHTSTQNAQYSFMLLLLNVSLFFH 578
>U46675-3|AAB52643.1| 375|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 10 protein.
Length = 375
Score = 28.3 bits (60), Expect = 4.6
Identities = 19/51 (37%), Positives = 22/51 (43%)
Frame = +3
Query: 240 QNPCATWWPQASSC*GCHLWQAQEPWCQPVEAHAQPSIHC*GACWPSLRWS 392
QNPCA Q S C Q +P Q AQP C AC P+ + S
Sbjct: 275 QNPCACQQAQPS----CDCAQQAQPTFQVQVQQAQPINQCVPACQPACQSS 321
>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
protein 1 protein.
Length = 4568
Score = 27.9 bits (59), Expect = 6.1
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +1
Query: 433 YKYFEVILVDPSHKAIRRDP-KINWIVNAVHKHREMR 540
Y F +L D + K R DP K++W V AVHK E R
Sbjct: 423 YDKFIALLRDINKKK-RDDPSKLSWKVTAVHKRLETR 458
>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
protein.
Length = 4568
Score = 27.9 bits (59), Expect = 6.1
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +1
Query: 433 YKYFEVILVDPSHKAIRRDP-KINWIVNAVHKHREMR 540
Y F +L D + K R DP K++W V AVHK E R
Sbjct: 423 YDKFIALLRDINKKK-RDDPSKLSWKVTAVHKRLETR 458
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 27.9 bits (59), Expect = 6.1
Identities = 17/57 (29%), Positives = 21/57 (36%)
Frame = -2
Query: 415 PSKSSTHGDHRNDGQHAPQQWIEGCAWASTG*HHGSWACHKWHP*QLDACGHHVAHG 245
P+ HG+H + H A A G HHG H H + HH HG
Sbjct: 452 PAHHGHHGEHHHAPAHHGHHGEHHHAPAHHG-HHGEHGTHHGHHGSHHSPAHHGHHG 507
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/56 (28%), Positives = 21/56 (37%)
Frame = -2
Query: 415 PSKSSTHGDHRNDGQHAPQQWIEGCAWASTG*HHGSWACHKWHP*QLDACGHHVAH 248
P+ HG+H + H G G HH + A H H GHH +H
Sbjct: 500 PAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSH 555
>Z46828-1|CAA86856.1| 542|Caenorhabditis elegans Hypothetical
protein R03D7.2 protein.
Length = 542
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 79 ELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPR 177
EL R + + + ++ R W LTR+HR P+
Sbjct: 264 ELKRAAIGEPLTLAVKGRRWPSMHLTRVHRCPK 296
>U55857-5|AAA98031.1| 602|Caenorhabditis elegans Hypothetical
protein K08D10.5 protein.
Length = 602
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 79 ELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPR 177
EL R + + + ++ R W LTR+HR P+
Sbjct: 363 ELKRAAVGEPLTLAVKGRRWSSMHLTRVHRCPK 395
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,434,322
Number of Sequences: 27780
Number of extensions: 303239
Number of successful extensions: 636
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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