Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_F03
(384 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal prot... 128 4e-31
SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal prote... 126 1e-30
SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual 27 0.76
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 27 1.3
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ... 26 1.8
SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3 ... 26 2.3
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc... 26 2.3
SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||... 25 4.1
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 25 4.1
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce... 25 5.4
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha... 25 5.4
SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch... 24 7.1
SPAC24B11.06c |sty1|spc1, phh1|MAP kinase Sty1|Schizosaccharomyc... 24 7.1
>SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal protein
L37a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 94
Score = 128 bits (308), Expect = 4e-31
Identities = 55/90 (61%), Positives = 70/90 (77%), Gaps = 2/90 (2%)
Frame = +2
Query: 41 MAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSC--K 214
M KRTKKVG+TGKYG RYGASLR+ V+K+EV QH++Y C FCG++ +KR+ GIW C K
Sbjct: 1 MTKRTKKVGVTGKYGVRYGASLRRDVRKIEVQQHSRYQCPFCGRNTVKRTAAGIWCCNGK 60
Query: 215 RCKRTVXGGAWVFSTTAASSCRSAVRRLRE 304
CK+ + GGAW +T AA+S RS +RRLRE
Sbjct: 61 GCKKVLAGGAWTVTTAAATSARSTIRRLRE 90
>SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal protein
L37a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 94
Score = 126 bits (304), Expect = 1e-30
Identities = 55/90 (61%), Positives = 69/90 (76%), Gaps = 2/90 (2%)
Frame = +2
Query: 41 MAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSC--K 214
M KRTKKVG+TGKYG RYGASLR+ V+K+EV QH++Y C FCG+ +KR+ GIW C K
Sbjct: 1 MTKRTKKVGVTGKYGVRYGASLRRDVRKIEVQQHSRYQCPFCGRLTVKRTAAGIWKCSGK 60
Query: 215 RCKRTVXGGAWVFSTTAASSCRSAVRRLRE 304
C +T+ GGAW +T AA+S RS +RRLRE
Sbjct: 61 GCSKTLAGGAWTVTTAAATSARSTIRRLRE 90
>SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 27.5 bits (58), Expect = 0.76
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -1
Query: 231 TVLLHRLQDQMPTQERFIASLPQNEQVYFACWVTS 127
T +L ++ Q+ T F+A + +NE +FA W TS
Sbjct: 70 TSVLRQVGWQLSTS--FVAHVSENENTFFAIWYTS 102
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 26.6 bits (56), Expect = 1.3
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -2
Query: 89 VCHICQ*FQPFWYVWPFW*TSPDTK 15
+ ++ Q FQ WY WPF D K
Sbjct: 1251 IVYLVQDFQRLWYHWPFLSVENDDK 1275
>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 782
Score = 26.2 bits (55), Expect = 1.8
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +2
Query: 137 QHAKYT-CSFCGKDAMKRSCVGIWSCKRCKR 226
+H K T C C + +K C +W C+ CK+
Sbjct: 15 RHRKITSCRECHR--LKLKCDRVWPCENCKK 43
>SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 315
Score = 25.8 bits (54), Expect = 2.3
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +1
Query: 172 GCYETFLCRHLVL*AMQEDCXRRSLGILH 258
G + +LC+ L + E C S+G+LH
Sbjct: 234 GSKDRYLCKDLTVVMTHEPCVMCSMGLLH 262
>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 609
Score = 25.8 bits (54), Expect = 2.3
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 124 LFDHFT*RGTVTCAIFASNSNLFGT 50
+FD FT +T I ASN N FG+
Sbjct: 550 VFDEFTNISNLTSPIEASNGNTFGS 574
>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
1|||Manual
Length = 654
Score = 25.0 bits (52), Expect = 4.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 228 VLLHRLQDQMPTQERFIASLPQNEQV 151
+L +L +Q+PT R AS+P QV
Sbjct: 32 LLKQKLTEQLPTTFRITASIPHATQV 57
>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 791
Score = 25.0 bits (52), Expect = 4.1
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -3
Query: 79 FASNSNLFGTFGHFGKPLXIQKLTES 2
FA+N LFG HF + L ++ S
Sbjct: 149 FATNEKLFGVKSHFDEDLYTSRIDRS 174
>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 351
Score = 24.6 bits (51), Expect = 5.4
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 126 IFLTILRREAP*RVPYLPVIPTFLVRLAILVNL 28
I L I + P Y+P++P L RL L N+
Sbjct: 253 IMLEICSSQLPFVEQYMPILPLLLERLKSLQNM 285
>SPBC29A3.05 |||chromatin remodeling complex
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 139
Score = 24.6 bits (51), Expect = 5.4
Identities = 10/27 (37%), Positives = 12/27 (44%)
Frame = +2
Query: 146 KYTCSFCGKDAMKRSCVGIWSCKRCKR 226
KY C CG + C I S RC +
Sbjct: 110 KYACQNCGTSYCSKGCEVIHSETRCMK 136
>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
Nak1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 24.2 bits (50), Expect = 7.1
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +1
Query: 16 FVSGEVYQNGQTYQKGWNYWQIWHTLRCLST*NGQKDGSNPTRKVYLL 159
+++ EV ++GQ Y + W + T ++T + +P R VYL+
Sbjct: 174 WMAPEVIRDGQEYNVMADIWSLGITAYEIATGSPPHAKEDPFRAVYLI 221
>SPAC24B11.06c |sty1|spc1, phh1|MAP kinase Sty1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 349
Score = 24.2 bits (50), Expect = 7.1
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -1
Query: 186 RFIASLPQNEQVYFA 142
RF+ SLPQ E+V FA
Sbjct: 248 RFVQSLPQKEKVPFA 262
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,383,016
Number of Sequences: 5004
Number of extensions: 27196
Number of successful extensions: 78
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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