Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_F02
(631 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces... 182 4e-47
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 30 0.32
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch... 27 2.2
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo... 27 3.0
SPCC553.06 |||oligosaccharyltransferase subunit|Schizosaccharomy... 27 3.0
SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyc... 26 3.9
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr... 25 9.0
SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|... 25 9.0
>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 195
Score = 182 bits (443), Expect = 4e-47
Identities = 90/185 (48%), Positives = 126/185 (68%), Gaps = 2/185 (1%)
Frame = +2
Query: 41 KIIKASGAEADSFETSISQALVELETNS-DLKAQLRELYITKAKEIELHN-KKSIIIYVP 214
KI+K S ++ + ++Q L +LE++S D+ +LR L IT A+E+E+ KK+I+++VP
Sbjct: 6 KIVKRSSSQPTETDLLVAQCLYDLESSSKDMAKELRPLQITSAREVEVGGGKKAIVVFVP 65
Query: 215 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 394
P LKAF K Q RL RELEKKF+ +HV+F+ R+ILPKP K+RV QKRPRSRTLT+V
Sbjct: 66 QPLLKAFHKCQARLTRELEKKFADRHVIFIAQRRILPKPGRKSRVT--QKRPRSRTLTAV 123
Query: 395 YDAILXDLVFPAEIVXKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYNKANGTRS 574
++AIL D+VFP EI+ KR R DG + IKV LD T+++K+ +F SVY+K G
Sbjct: 124 HNAILEDIVFPTEIIGKRTRQATDGRKTIKVFLDNRDANTVDYKLGSFSSVYHKLTGKNV 183
Query: 575 DLRVP 589
P
Sbjct: 184 TFEFP 188
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 29.9 bits (64), Expect = 0.32
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Frame = +2
Query: 290 HVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILXDLVFPAEIVXKRIRVKLDG 469
H V V D+ + P N+Q R +L+ + D + V E V R K G
Sbjct: 1594 HTVLVLDKSVHQFPWESLPCLNRQSVSRVPSLSILRDILSQSFVVNGEYVEVR---KEAG 1650
Query: 470 SQLIKVHLD-KNQQTTIEHKV 529
S ++ LD K+ Q EHK+
Sbjct: 1651 SYILNPSLDLKHTQEMFEHKL 1671
>SPCC1020.09 |||WD repeat protein, human WDR79
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 399
Score = 27.1 bits (57), Expect = 2.2
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = -2
Query: 333 LGLGRILRSPTKTTCLPLNFFSSSRTS 253
LG I +SPTK PLNFF SSR S
Sbjct: 33 LGTNVIAQSPTK----PLNFFHSSRWS 55
>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
Vps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 26.6 bits (56), Expect = 3.0
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +2
Query: 203 IYVPMPKLKAFQKIQIRLVRELEKKFSGKHV 295
+++P K F+KI+ +VRE E+K +GK+V
Sbjct: 101 LHLPGQKFFEFEKIREEIVRETEEK-TGKNV 130
>SPCC553.06 |||oligosaccharyltransferase subunit|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 271
Score = 26.6 bits (56), Expect = 3.0
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Frame = +2
Query: 5 FSLPLKL----STMSTKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKE 172
F +P L ST++ K++ AS E F + Q + + + KA+ L KE
Sbjct: 113 FDIPTSLLRSDSTLTAKLLVASFGETIPFSLPLGQLSINVPPSLYHKAEFSPLDELSPKE 172
Query: 173 IELH 184
+ LH
Sbjct: 173 VILH 176
>SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 490
Score = 26.2 bits (55), Expect = 3.9
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Frame = +2
Query: 311 RKILPKPSHKTRVANKQKRPRSRTLT-SVYDAILXDLVFPAEIVXKRIRVKLDGSQLIKV 487
R+IL P+ K A P++ L+ S+ + E + I +L +K+
Sbjct: 215 REIL-SPAEKALKAALLAEPKTAELSNSMKSTSMFAFKEGIETITLSIADELKKMPNVKI 273
Query: 488 HLDKNQQTTIEHKVDTFQSVYNKA 559
HL+K +T + HK + V +A
Sbjct: 274 HLNKPAKTLVPHKTQSLVDVNGQA 297
>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 703
Score = 25.0 bits (52), Expect = 9.0
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = -1
Query: 379 P*AWPLLFVSNTSFVAGLRQDLTVSN 302
P A +LF+S TSF++G+ Q + ++N
Sbjct: 373 PPAAMILFISCTSFISGILQLVLLNN 398
>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 532
Score = 25.0 bits (52), Expect = 9.0
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -2
Query: 510 VCWFLSKCTLMSCEPSNLTLMR 445
+C FL K T SC NL L++
Sbjct: 207 LCSFLPKSTYRSCRSDNLDLLK 228
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,402,873
Number of Sequences: 5004
Number of extensions: 46734
Number of successful extensions: 150
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -