Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_F02
         (631 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L20837-1|AAA03087.1|  192|Anopheles gambiae ribosomal protein S7...   275   9e-76
AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic acetylch...    24   3.5  
AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    24   3.5  
U43500-1|AAA93303.1|  280|Anopheles gambiae a-CD36 protein.            23   8.0  

>L20837-1|AAA03087.1|  192|Anopheles gambiae ribosomal protein S7
           protein.
          Length = 192

 Score =  275 bits (674), Expect = 9e-76
 Identities = 131/176 (74%), Positives = 150/176 (85%)
 Frame = +2

Query: 38  TKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPM 217
           +K+IKA   E D+FET I QA++ELE NSDLK QLR+LYIT+A+E+E +NKK+IIIYVP+
Sbjct: 5   SKVIKAGNGEPDAFETQIGQAILELEMNSDLKPQLRDLYITRAREVEFNNKKAIIIYVPV 64

Query: 218 PKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVY 397
           PK KAFQK+Q RLVRELEKKFSGKHVVF+ +R+ILPKP    R  NKQKRPRS  +T+VY
Sbjct: 65  PKQKAFQKVQTRLVRELEKKFSGKHVVFIAERRILPKPMRGRRDPNKQKRPRSPNVTAVY 124

Query: 398 DAILXDLVFPAEIVXKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYNKANG 565
           DAIL DLVFPAE+V KRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTF SVY K  G
Sbjct: 125 DAILEDLVFPAEVVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFASVYKKLTG 180



 Score = 34.7 bits (76), Expect = 0.002
 Identities = 17/24 (70%), Positives = 20/24 (83%)
 Frame = +3

Query: 531 TPSSLYTTKLTGREVTFEFPEPYL 602
           T +S+Y  KLTGR+VTFEFPE YL
Sbjct: 170 TFASVYK-KLTGRDVTFEFPENYL 192


>AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 17/44 (38%), Positives = 28/44 (63%)
 Frame = +2

Query: 383 LTSVYDAILXDLVFPAEIVXKRIRVKLDGSQLIKVHLDKNQQTT 514
           L S Y+ ++  +V  ++++  R+ +KL  SQLI V+L KNQ  T
Sbjct: 35  LLSNYNKLVRPVVNTSDVL--RVCIKLKLSQLIDVNL-KNQIMT 75


>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 17/44 (38%), Positives = 28/44 (63%)
 Frame = +2

Query: 383 LTSVYDAILXDLVFPAEIVXKRIRVKLDGSQLIKVHLDKNQQTT 514
           L S Y+ ++  +V  ++++  R+ +KL  SQLI V+L KNQ  T
Sbjct: 35  LLSNYNKLVRPVVNTSDVL--RVCIKLKLSQLIDVNL-KNQIMT 75


>U43500-1|AAA93303.1|  280|Anopheles gambiae a-CD36 protein.
          Length = 280

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 280 ELLFELTDKPDLDLLKGLQFRHRHIDDDR 194
           ELLFE    P LDLLK +     +I  D+
Sbjct: 96  ELLFEGVKDPLLDLLKTINSTSLNIPFDK 124


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 600,616
Number of Sequences: 2352
Number of extensions: 12279
Number of successful extensions: 24
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 61468785
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)