Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_F02
         (631 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical pr...   213   9e-56
U23179-7|AAC46721.1|  782|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z78063-2|CAB01503.2|  275|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z78420-2|CAB01710.3|  738|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical
           protein ZC434.2 protein.
          Length = 194

 Score =  213 bits (520), Expect = 9e-56
 Identities = 101/188 (53%), Positives = 134/188 (71%), Gaps = 1/188 (0%)
 Frame = +2

Query: 41  KIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMP 220
           K++K+ G      E  +SQAL++LETN D+++QL+ELYI   KE+EL NK +IIIYVP+P
Sbjct: 7   KLLKSDGKVVSEIEKQVSQALIDLETNDDVQSQLKELYIVGVKEVELGNKSAIIIYVPVP 66

Query: 221 KLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRV-ANKQKRPRSRTLTSVY 397
           +LKAF KI   LVRELEKKF G+ ++ +  R+ILPKP   ++    KQKRPRSRTLT+V+
Sbjct: 67  QLKAFHKIHPALVRELEKKFGGRDILILAKRRILPKPQRGSKARPQKQKRPRSRTLTAVH 126

Query: 398 DAILXDLVFPAEIVXKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYNKANGTRSD 577
           DA L +LV+PAE+V +RIRVKLDG ++ KVHLDK+ QT + HK+  F SVY K  G    
Sbjct: 127 DAWLDELVYPAEVVGRRIRVKLDGKKVYKVHLDKSHQTNVGHKIGVFASVYRKLTGKDVT 186

Query: 578 LRVPRTLF 601
              P  +F
Sbjct: 187 FEFPDPIF 194


>U23179-7|AAC46721.1|  782|Caenorhabditis elegans Hypothetical
           protein C27D6.1 protein.
          Length = 782

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 18/61 (29%), Positives = 31/61 (50%)
 Frame = +2

Query: 17  LKLSTMSTKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKS 196
           LK +  + K I+A   +     T  S+ L ELE       Q +E +  K++E+E+ NK+ 
Sbjct: 242 LKANEKARKEIEAEAEKWKDRATRNSKRLPELELELAETVQAKEEWQVKSQEMEIQNKQL 301

Query: 197 I 199
           +
Sbjct: 302 V 302


>U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical
           protein F07F6.4 protein.
          Length = 529

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +3

Query: 105 SNSKPTPTSKPNFGSFTLQKLKKLNYTIRSRSSSMCR 215
           S+SK T      F SF  Q ++K  YT  S SSS  R
Sbjct: 376 SSSKKTTKEDDFFDSFETQPVQKSRYTASSSSSSTSR 412


>Z78063-2|CAB01503.2|  275|Caenorhabditis elegans Hypothetical
           protein F45D3.2 protein.
          Length = 275

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
 Frame = +2

Query: 8   SLPLKLSTMSTKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHN 187
           SLP+  ST++      S   + S  TS+ + LVE +       ++R + +TK +E  +  
Sbjct: 159 SLPITTSTITCS--SNSSPSSSSITTSVLRTLVEDDDADVHPNKVRPIQVTKEEEDLVRR 216

Query: 188 K-KSIIIYVPMPKLK 229
           K + ++  +P+ KL+
Sbjct: 217 KTQELLKSMPLQKLE 231


>Z78420-2|CAB01710.3|  738|Caenorhabditis elegans Hypothetical
           protein F45H11.3 protein.
          Length = 738

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -1

Query: 127 VGVGFEFDQRLRDRGLEGIRLSTARFDDL 41
           V VGFE   RLRD+GL   +LS   +D L
Sbjct: 522 VEVGFENWIRLRDKGLSHSQLSCQLYDTL 550


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,356,615
Number of Sequences: 27780
Number of extensions: 267766
Number of successful extensions: 776
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)