Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_F01
         (453 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55959| Best HMM Match : No HMM Matches (HMM E-Value=.)             149   1e-36
SB_50663| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.78 
SB_35369| Best HMM Match : Helicase_C (HMM E-Value=6.1e-05)            30   0.78 
SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)                 30   1.0  
SB_27024| Best HMM Match : Pkinase (HMM E-Value=4.7e-25)               28   3.1  
SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)               28   4.2  
SB_38790| Best HMM Match : E-MAP-115 (HMM E-Value=1.9)                 27   5.5  
SB_20049| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05)                 27   5.5  
SB_37931| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_22851| Best HMM Match : Sad1_UNC (HMM E-Value=0)                    27   9.6  

>SB_55959| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 100

 Score =  149 bits (361), Expect = 1e-36
 Identities = 70/88 (79%), Positives = 79/88 (89%), Gaps = 2/88 (2%)
 Frame = +2

Query: 194 RNVRSLEKV--CADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRI 367
           + VR+  KV  CADLI GAK++KL+VKGPVRMPTK LRITTRKTPCGEGSKTWDR++MRI
Sbjct: 6   KKVRTTRKVTVCADLIRGAKEKKLKVKGPVRMPTKFLRITTRKTPCGEGSKTWDRYEMRI 65

Query: 368 HXRVIDLHSPSEIVKQITSINIEPGVXV 451
           H R+IDLHSPSEIVKQITSI+IEPGV V
Sbjct: 66  HKRLIDLHSPSEIVKQITSISIEPGVEV 93


>SB_50663| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 437

 Score = 30.3 bits (65), Expect = 0.78
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
 Frame = +1

Query: 163 YSPHQDHSYFSQCALTR---EGLC*PNQWSQETEAACKGPSPHANQDPAYHHP 312
           Y P   +SY + CA T+   +G        +   A+ +   PH N DPA+  P
Sbjct: 267 YDPQNPYSYGAYCAYTQAQPQGFNAQAYPYENNSASARPAMPHYNSDPAHTEP 319


>SB_35369| Best HMM Match : Helicase_C (HMM E-Value=6.1e-05)
          Length = 584

 Score = 30.3 bits (65), Expect = 0.78
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 193 SQCALTREGLC*PNQWSQETEAACKGPSPHANQDPAYHHP 312
           S C     GLC P  +   ++ +  GPSP +  DP+   P
Sbjct: 412 SICLCAPSGLCVPIHFLPNSDPSLAGPSPSSKLDPSIRDP 451


>SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)
          Length = 2436

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +2

Query: 128 KDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCAD 229
           + + K Q E + IH + +T   ++VRSLE+ C +
Sbjct: 663 RQLHKIQEESTRIHHLAVTALEKDVRSLEQRCLE 696


>SB_27024| Best HMM Match : Pkinase (HMM E-Value=4.7e-25)
          Length = 1595

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +1

Query: 28  EVSPASALNNF*LKSCLSRPEFNKQHGSRCSVRQRHRETP-GRGLPY 165
           E++P  +L +      L R E  K+H    S++   ++TP GRGL Y
Sbjct: 454 ELAPHGSLASVMEDITLGRRETEKEHVGAKSIKYETKQTPLGRGLTY 500


>SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)
          Length = 1878

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 268  GPSPHANQDPAYHHP 312
            GP PH+ Q P  HHP
Sbjct: 1189 GPPPHSMQQPLLHHP 1203


>SB_38790| Best HMM Match : E-MAP-115 (HMM E-Value=1.9)
          Length = 198

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 17/39 (43%), Positives = 20/39 (51%)
 Frame = +1

Query: 106 GSRCSVRQRHRETPGRGLPYSPHQDHSYFSQCALTREGL 222
           GSR   R RHR  PGR  P  P    S+ ++ A  R GL
Sbjct: 2   GSRSHRRARHRGGPGRRRPLKP----SFTTEGAAARLGL 36


>SB_20049| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05)
          Length = 1023

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 67  KSCLSRPEFNKQHGSRCS-VRQRHRETPGRGLPYSPHQ 177
           +S ++   +  +H S  S V+ R+R   G+G+ Y PHQ
Sbjct: 744 RSQINVTRYRPRHPSSTSTVKYRYRLWTGKGVDYQPHQ 781


>SB_37931| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 361

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +2

Query: 95  TSNMAAAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEK 217
           T N A+ ++S   + +PQA + P+H   I + SRN  ++ K
Sbjct: 306 TLNSASVILS---LAEPQAGILPVHPHSIEIASRNRDAIAK 343


>SB_22851| Best HMM Match : Sad1_UNC (HMM E-Value=0)
          Length = 1705

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = +2

Query: 59   FD*KVVYLGRNSTSNMAAAVVSGKD-IEKPQAEVSPIHRIRITLTSRNVRSLEK 217
            FD K VYL RN+T+   AA+ S K+ I + QA +S +      + +R + +L K
Sbjct: 1396 FD-KKVYLLRNATTKAEAAIKSQKEQISRLQARLSAMEEANENV-NRKLDTLNK 1447


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,367,493
Number of Sequences: 59808
Number of extensions: 311507
Number of successful extensions: 645
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 908427626
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)