Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_E24
(616 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha... 174 7e-45
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar... 174 1e-44
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S... 29 0.71
SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces ... 27 2.2
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|... 27 2.8
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 26 5.0
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 26 5.0
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph... 25 6.6
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 25 6.6
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 25 8.7
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 25 8.7
>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 174 bits (424), Expect = 7e-45
Identities = 89/156 (57%), Positives = 109/156 (69%)
Frame = +3
Query: 141 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDA 320
R RGGN K+RALRLD+GNFSWGSE ++KTRII V Y+ SNNELVRT TL K+AIV +DA
Sbjct: 47 RVRGGNKKFRALRLDSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDA 106
Query: 321 TPFRQWYESHYTLPLGRKXGAKLTXAEEAIINXXRSQKTARKYLAXQRLAKVEGALXEQF 500
PFR WYE+HY + +G K G K T +S+ RK+ A +KV+ AL QF
Sbjct: 107 APFRVWYETHYGILMGSK-GKKATSTPN-----PKSKHVQRKHSARLGDSKVDSALETQF 160
Query: 501 HTGRLLACVASRPGQCGRADGYILQGKELEFYLXKI 608
GRL A V+SRPGQ GR DGYIL+G+EL FYL ++
Sbjct: 161 AAGRLYAVVSSRPGQSGRCDGYILEGEELHFYLRRM 196
Score = 47.6 bits (108), Expect = 1e-06
Identities = 20/28 (71%), Positives = 24/28 (85%)
Frame = +2
Query: 50 KRAPIRKKRKYELGRPAANTRLGPQRIH 133
KRA RKKRK+ELGR +NTR+GP+RIH
Sbjct: 17 KRAQYRKKRKFELGRQPSNTRIGPKRIH 44
>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 174 bits (423), Expect = 1e-44
Identities = 89/156 (57%), Positives = 109/156 (69%)
Frame = +3
Query: 141 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDA 320
R RGGN K+RALRLD+GNFSWGSE ++KTRII V Y+ SNNELVRT TL K+AIV +DA
Sbjct: 47 RVRGGNKKFRALRLDSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDA 106
Query: 321 TPFRQWYESHYTLPLGRKXGAKLTXAEEAIINXXRSQKTARKYLAXQRLAKVEGALXEQF 500
PFR WYE+HY + +G K G K T +S+ RK+ A +KV+ AL QF
Sbjct: 107 APFRVWYETHYGILMGSK-GKKATATP-----TPKSKHVQRKHSARLGDSKVDSALETQF 160
Query: 501 HTGRLLACVASRPGQCGRADGYILQGKELEFYLXKI 608
GRL A V+SRPGQ GR DGYIL+G+EL FYL ++
Sbjct: 161 AAGRLYAVVSSRPGQSGRCDGYILEGEELHFYLRRM 196
Score = 47.6 bits (108), Expect = 1e-06
Identities = 20/28 (71%), Positives = 24/28 (85%)
Frame = +2
Query: 50 KRAPIRKKRKYELGRPAANTRLGPQRIH 133
KRA RKKRK+ELGR +NTR+GP+RIH
Sbjct: 17 KRAQYRKKRKFELGRQPSNTRIGPKRIH 44
>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 28.7 bits (61), Expect = 0.71
Identities = 21/74 (28%), Positives = 36/74 (48%)
Frame = +3
Query: 123 SVSTPXRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNA 302
+V +P +R T R+L +G S S ++ +TR V +AS+N L+ + ++
Sbjct: 534 TVISPQPTRRSRTPIRSL---SGRSSVASSRNSSRTRSYSNVSSASSNSLISIISSKPSS 590
Query: 303 IVVVDATPFRQWYE 344
V TPF +E
Sbjct: 591 STVQRQTPFHSPFE 604
>SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 655
Score = 27.1 bits (57), Expect = 2.2
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -2
Query: 612 T*SXLDRTRVLCLVRCNHRRDHTDLGDSPRKPANAPCGIALXE 484
T S D + CL+R H+RD + + RK N G L E
Sbjct: 429 TNSGKDANIIPCLLRSKHKRDKANPENKERKLVNNLLGAQLLE 471
>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
Mts4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 26.6 bits (56), Expect = 2.8
Identities = 18/67 (26%), Positives = 29/67 (43%)
Frame = +3
Query: 114 SVLSVSTPXRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLV 293
SVL +S S+ + KYR + T WG E I+ + + E T L+
Sbjct: 128 SVLGMSYSNTSKHESLKYRLQGVTTDPSLWGHEYVRHLASEIEEEFASRQEEEAPTDDLM 187
Query: 294 KNAIVVV 314
+ A+ +V
Sbjct: 188 ELALTIV 194
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 25.8 bits (54), Expect = 5.0
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 340 YHCLNGVASTTTIAFLTRVFVRTNS 266
++C N V S T + + VFVR NS
Sbjct: 518 FYCSNEVLSLTALLSVPNVFVRPNS 542
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 25.8 bits (54), Expect = 5.0
Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +3
Query: 201 WGSEC--STRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRK 374
WGS+ +K + +V+ +++ + +T L AT F + +S+Y +PL R+
Sbjct: 250 WGSQSYLQEKKAGLAEVLNISTSQQKPKTTALDYEVFRHEMATKFSSFADSYYPVPLDRE 309
>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
Phf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 538
Score = 25.4 bits (53), Expect = 6.6
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 262 LDALYTTSMIRVLRVEHSDPQEKLPVSRR 176
L+ + T S +V R H DP KLP RR
Sbjct: 193 LEGVKTKSGRKVHRPNHFDPLVKLPTRRR 221
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 25.4 bits (53), Expect = 6.6
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = -2
Query: 186 CPDAAHGT*YF--HHVNEXEWIR*GPSLVFAAGRPNSYFLFLRMGARFP 46
CPD + G Y V + ++R PS+++A ++ LF+R+ ++P
Sbjct: 307 CPDPSQGFNYCIREAVFQGYFVRPLPSIIWALFEFSAVALFIRLKMKYP 355
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 25.0 bits (52), Expect = 8.7
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 159 TKYRALRLDTGNFSWGSECSTRKTRI 236
T YRA+ LDTG+ E + K RI
Sbjct: 1133 TVYRAVNLDTGDLMAVKEVALHKPRI 1158
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 25.0 bits (52), Expect = 8.7
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = +3
Query: 60 PYARRGSMS*GVP--LQTPGSVLSVSTPXRSRGGNTKY 167
PY R ++ +P L G +LSV SRG TKY
Sbjct: 1174 PYNTRNFITFSIPRLLYEQGGILSVPGLNTSRGFETKY 1211
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,370,600
Number of Sequences: 5004
Number of extensions: 44199
Number of successful extensions: 119
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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