Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_E24
(616 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0510 - 16659486-16659564,16659772-16659947,16660464-166607... 200 7e-52
02_03_0270 + 17135464-17135467,17135583-17135655,17136253-171365... 186 1e-47
01_06_0657 - 30940020-30940034,30940226-30940861 30 1.7
01_02_0013 + 10162478-10163581 29 2.2
03_01_0350 - 2753217-2754152 29 3.9
01_01_1134 + 8994315-8995892 29 3.9
12_01_1080 + 11241590-11241625,11241723-11242018,11242113-112422... 28 5.1
03_01_0161 + 1307206-1307769,1307979-1308101,1308182-1308286,130... 28 5.1
06_02_0131 + 12161268-12161781,12162123-12162867,12162950-121629... 28 6.8
04_03_0867 - 20414999-20415160,20415255-20415384,20415515-204157... 27 8.9
>04_03_0510 -
16659486-16659564,16659772-16659947,16660464-16660797,
16661564-16661636,16661780-16661783
Length = 221
Score = 200 bits (488), Expect = 7e-52
Identities = 100/165 (60%), Positives = 121/165 (73%), Gaps = 8/165 (4%)
Frame = +3
Query: 141 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDA 320
R RGGN K+RALRLDTGN+SWGSE TRKTRI+DVVYNASNNELVRT+TLVK+AIV VDA
Sbjct: 48 RVRGGNLKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDA 107
Query: 321 TPFRQWYESHYTLPLGRK---XGAKLTXA-----EEAIINXXRSQKTARKYLAXQRLAKV 476
PF+QWY +HY + +GRK AK A E A +S RK Q+ +
Sbjct: 108 APFKQWYLTHYGVDIGRKKKAPAAKKDAAEGQEGEAATEEAKKSNHVVRKLEKRQQTRTL 167
Query: 477 EGALXEQFHTGRLLACVASRPGQCGRADGYILQGKELEFYLXKIK 611
+ + EQF +GRLLAC++SRPGQCGRADGYIL+GKELEFY+ K++
Sbjct: 168 DSHIEEQFGSGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQ 212
Score = 35.9 bits (79), Expect = 0.026
Identities = 16/27 (59%), Positives = 19/27 (70%)
Frame = +2
Query: 47 GKRAPIRKKRKYELGRPAANTRLGPQR 127
GK+ RKKRKYELGR ANT+L +
Sbjct: 16 GKQKAWRKKRKYELGRQPANTKLSSNK 42
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +1
Query: 1 LGXSRDHWHKRRATG 45
+G SRD HKRRATG
Sbjct: 1 MGISRDSMHKRRATG 15
>02_03_0270 +
17135464-17135467,17135583-17135655,17136253-17136583,
17136916-17136969,17137219-17137394,17137607-17137685
Length = 238
Score = 186 bits (453), Expect = 1e-47
Identities = 99/182 (54%), Positives = 120/182 (65%), Gaps = 25/182 (13%)
Frame = +3
Query: 141 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDA 320
R RGGN K+RALRLDTGN+SWGSE TRKTRI+DVVYNASNNELVRT+TLVK+AIV VDA
Sbjct: 48 RVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDA 107
Query: 321 TPFRQWYESHYTLPLGRKXGA-------------------------KLTXAEEAIINXXR 425
PF+QWY +HY + +GRK A K AE +
Sbjct: 108 APFKQWYLTHYGVDIGRKKKAPAAKKDAEHALGKIRCLFIGLYVMLKGQDAEATTEEAKK 167
Query: 426 SQKTARKYLAXQRLAKVEGALXEQFHTGRLLACVASRPGQCGRADGYILQGKELEFYLXK 605
S RK Q+ ++ + EQF +GRLLAC++SRPGQCGRADGYIL+GKELEFY+ K
Sbjct: 168 SNHVVRKLEKRQQGRTLDAHIEEQFGSGRLLACISSRPGQCGRADGYILEGKELEFYMKK 227
Query: 606 IK 611
++
Sbjct: 228 LQ 229
Score = 35.9 bits (79), Expect = 0.026
Identities = 16/27 (59%), Positives = 19/27 (70%)
Frame = +2
Query: 47 GKRAPIRKKRKYELGRPAANTRLGPQR 127
GK+ RKKRKYELGR ANT+L +
Sbjct: 16 GKQKAWRKKRKYELGRQPANTKLSSNK 42
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +1
Query: 1 LGXSRDHWHKRRATG 45
+G SRD HKRRATG
Sbjct: 1 MGISRDSMHKRRATG 15
>01_06_0657 - 30940020-30940034,30940226-30940861
Length = 216
Score = 29.9 bits (64), Expect = 1.7
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = +3
Query: 15 GSLA*AKGHRLGNVRPYARRGSMS*GVPLQTPGSVLSVSTPXRSRGGNTKYRALRL-DTG 191
G++ A G+R+ P R GSMS G + GS +S S RG + + A G
Sbjct: 117 GTIGAAAGNRMRGFVPPGRGGSMSNGAGVVGHGSSMSHSAGVSGRGSSMSHGATGYGGFG 176
Query: 192 NFSWGSECSTRKT 230
W + S+ T
Sbjct: 177 GGGWDAGTSSAPT 189
>01_02_0013 + 10162478-10163581
Length = 367
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +1
Query: 154 EILSTVRCVWTPVTSLGDRNVQLAKPVSLMLCIMHLTMNWCVQRPL 291
E +S RC P+ G R + A SL + ++HL +C RPL
Sbjct: 240 EYMSPERCA--PMAMAGARVARAADVWSLGITVLHLYQGYCPARPL 283
>03_01_0350 - 2753217-2754152
Length = 311
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 23 GISEGPPAGKRAPIRKKRKYELGRPAANTR 112
G + PPA KR P R+++ +G A +TR
Sbjct: 242 GAAAAPPATKRTPQRRRKPESVGDEAIDTR 271
>01_01_1134 + 8994315-8995892
Length = 525
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +3
Query: 189 GNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFR 332
G FS C+ RK +DV + RT +N+ VV D+T F+
Sbjct: 146 GLFSRDCPCAGRKAVTVDVASEPRSPATPRTHARFENSHVVADSTIFK 193
>12_01_1080 + 11241590-11241625,11241723-11242018,11242113-11242269,
11242381-11242449,11242551-11243480,11243868-11243906,
11244414-11244478,11244663-11244768,11244850-11245050,
11247001-11247201,11247756-11247779,11249425-11249586,
11249676-11249915,11250267-11250479,11250618-11250968,
11251041-11251193,11251649-11251858,11252049-11252267,
11252365-11252482,11252879-11253828,11254023-11254220,
11254294-11254553,11255316-11255505,11255817-11256169,
11258278-11258386,11258466-11258615,11258748-11258844,
11259315-11259415
Length = 2065
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/51 (31%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Frame = +3
Query: 183 DTGN-FSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVD-ATPF 329
DT N FS+GS+ ++ + + + ++ S+ ++ + +V NA +VV A+PF
Sbjct: 1340 DTNNCFSYGSQRASTERTLGNDMHPGSSIQITESARIVNNANIVVQVASPF 1390
>03_01_0161 +
1307206-1307769,1307979-1308101,1308182-1308286,
1308688-1308867,1308988-1309050,1309151-1309345,
1309704-1309805,1309885-1309947,1310045-1310113,
1310215-1310270,1310587-1310755
Length = 562
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +3
Query: 150 GGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVV 311
GG T R +R + C +++ ++V++ + NELV T +N I+V
Sbjct: 383 GGGTADRCIRFWNTTTNMHLNCVDTGSQVCNLVWSKNVNELVSTHGYSQNQIIV 436
>06_02_0131 +
12161268-12161781,12162123-12162867,12162950-12162986,
12163083-12163216,12163298-12163625
Length = 585
Score = 27.9 bits (59), Expect = 6.8
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Frame = -1
Query: 328 NGVASTTTIAFLTRVFVRTNS---LLDALYTTSMIRVLRVEHSDPQEKLPVSRRSARYLV 158
+G+ ST ++ FL + T + +L+ +YT ++ EH DP + + ++RYL+
Sbjct: 392 SGLQSTQSLPFLEEHDMSTEAFEKVLEYMYTDNL------EHMDPNQAEELFDIASRYLL 445
Query: 157 FP 152
FP
Sbjct: 446 FP 447
>04_03_0867 -
20414999-20415160,20415255-20415384,20415515-20415702,
20415967-20416001,20416363-20416579,20416737-20416820,
20417609-20417875,20417954-20418061,20418163-20418249,
20418629-20419399
Length = 682
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +1
Query: 163 STVRCVWTPVTSLGDRNVQLAKPVSLMLCIMHLTMN 270
+ + C+W + SLG R Q++K + L ++ + +N
Sbjct: 286 TVIPCMWLVIASLGRRLRQISKEAHISLAMLTVYLN 321
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,718,313
Number of Sequences: 37544
Number of extensions: 334674
Number of successful extensions: 1018
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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