Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_E24
(616 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal prote... 226 1e-59
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis... 31 0.49
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis... 31 0.49
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis... 31 0.49
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis... 31 0.49
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis... 31 0.49
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res... 31 0.49
L14745-8|AAA27923.1| 244|Caenorhabditis elegans Tetraspanin fam... 28 6.1
AL117205-7|CAB55160.1| 293|Caenorhabditis elegans Hypothetical ... 28 6.1
>U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 8 protein.
Length = 208
Score = 226 bits (552), Expect = 1e-59
Identities = 104/158 (65%), Positives = 127/158 (80%)
Frame = +3
Query: 141 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDA 320
R+RGGN KYRALRLD+GNFSW SE +TRKTRI+D +YNA+NNELVRTKTLVK AI+ VDA
Sbjct: 47 RTRGGNEKYRALRLDSGNFSWASEQTTRKTRIVDTMYNATNNELVRTKTLVKGAIISVDA 106
Query: 321 TPFRQWYESHYTLPLGRKXGAKLTXAEEAIINXXRSQKTARKYLAXQRLAKVEGALXEQF 500
PFRQWYE+HY LPL RK AKL+ + AI+N RS T +KY Q+ A V+ L EQF
Sbjct: 107 APFRQWYEAHYALPLARKKNAKLSEEDNAILNKKRSHHTMKKYTERQKTAAVDALLIEQF 166
Query: 501 HTGRLLACVASRPGQCGRADGYILQGKELEFYLXKIKS 614
+TGRLLA ++S PGQ G+A+GYIL+GKEL+FYL KI++
Sbjct: 167 NTGRLLARISSSPGQVGQANGYILEGKELDFYLRKIRA 204
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/29 (58%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
Frame = +2
Query: 47 GKRAPI-RKKRKYELGRPAANTRLGPQRI 130
G P+ KKRK+ELGRPAANT++G R+
Sbjct: 15 GATQPVPHKKRKFELGRPAANTKIGAHRV 43
Score = 27.5 bits (58), Expect = 8.1
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +1
Query: 1 LGXSRDHWHKRRATG 45
+G SRD WHKR TG
Sbjct: 1 MGISRDSWHKRYKTG 15
>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug
resistance related protein1 protein.
Length = 1540
Score = 31.5 bits (68), Expect = 0.49
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +3
Query: 171 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 275
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform e protein.
Length = 1534
Score = 31.5 bits (68), Expect = 0.49
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +3
Query: 171 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 275
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform c protein.
Length = 1534
Score = 31.5 bits (68), Expect = 0.49
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +3
Query: 171 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 275
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform b protein.
Length = 1534
Score = 31.5 bits (68), Expect = 0.49
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +3
Query: 171 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 275
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform a protein.
Length = 1528
Score = 31.5 bits (68), Expect = 0.49
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +3
Query: 171 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 275
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
resistance-associatedprotein protein.
Length = 1534
Score = 31.5 bits (68), Expect = 0.49
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +3
Query: 171 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 275
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>L14745-8|AAA27923.1| 244|Caenorhabditis elegans Tetraspanin family
protein 1 protein.
Length = 244
Score = 27.9 bits (59), Expect = 6.1
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = -1
Query: 274 TNSLLDALYTTSMIRVLRV 218
TNSL+DA+YTT+ + L++
Sbjct: 133 TNSLIDAMYTTNSVNDLKI 151
>AL117205-7|CAB55160.1| 293|Caenorhabditis elegans Hypothetical
protein Y116A8A.8 protein.
Length = 293
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +3
Query: 213 CSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQ 335
CS + I ++A+NN ++ KT N I TPF Q
Sbjct: 51 CSIQNLMYIQKRFSANNNMIIALKTDTINEITESVCTPFEQ 91
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,502,928
Number of Sequences: 27780
Number of extensions: 264883
Number of successful extensions: 707
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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