Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_E21
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase Cgs2|Schi...    27   2.4  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    27   2.4  
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak...    26   5.5  
SPBC651.02 |||nitrilase |Schizosaccharomyces pombe|chr 2|||Manual      25   7.2  
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    25   7.2  

>SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase
           Cgs2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 346

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +2

Query: 344 GIIXATMACIVSWLEGHSLAQTVFTNLYLHQPHSINNK 457
           G+I  T+ C+++ L+ H L      ++ L Q  S+++K
Sbjct: 291 GVIMPTLTCLLTHLKSHPLQSANPADVILEQLESLSSK 328


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 227 PKMDAGMMCNRGTPKPLNFHQAVA 298
           P  D G++CN   P    FH +VA
Sbjct: 8   PSSDCGILCNHSVPSFPPFHSSVA 31


>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 708

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 9/16 (56%), Positives = 15/16 (93%)
 Frame = +2

Query: 200 AMSAIEMMDPKMDAGM 247
           ++SA E+M+PKMD+G+
Sbjct: 67  SISAFEIMEPKMDSGI 82


>SPBC651.02 |||nitrilase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 276

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +2

Query: 407 TVFTNLYLHQPHSINNKIL 463
           ++F N+ +H+P  + NK+L
Sbjct: 77  SIFVNICVHEPSKVKNKLL 95


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 8/33 (24%), Positives = 19/33 (57%)
 Frame = -3

Query: 556 WLKIXFFKYLSLVNTXSYAIQQLVYCYTECXQN 458
           W KI  + +L ++++  Y ++ +++CY     N
Sbjct: 647 WHKIKGWGFLKILSSKLYKLKGIIFCYYALTNN 679


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,639,858
Number of Sequences: 5004
Number of extensions: 50837
Number of successful extensions: 124
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)