Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_E20
(644 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po... 197 1e-51
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po... 193 2e-50
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy... 32 0.081
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 30 0.25
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar... 25 7.1
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 25 9.3
SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S... 25 9.3
>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 197 bits (481), Expect = 1e-51
Identities = 97/184 (52%), Positives = 126/184 (68%), Gaps = 2/184 (1%)
Frame = +1
Query: 88 SVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVXARRSSW 267
+ +E+ V AKLAEQAERY+ M MK V T EL+ EERNLLSVAYKNV+ ARR+SW
Sbjct: 3 TTSREDAVYLAKLAEQAERYEGMVENMKSVASTDQELTVEERNLLSVAYKNVIGARRASW 62
Query: 268 RVISSIEQK--TXGSERKQQMAKEYXVKVQKELXXICYDVLGLLDKHLIPKASNPXSKVF 441
R++SSIEQK + G+ + ++ KEY K+++EL IC D+L +L+KHLIP A++ SKVF
Sbjct: 63 RIVSSIEQKEESKGNTAQVELIKEYRQKIEQELDTICQDILTVLEKHLIPNAASAESKVF 122
Query: 442 YLKMKGDYYRYLAQVATGXTXHSVVQDSQKAYQDAFEISKAKMQPTHPIXAGSGVKFLSL 621
Y KMKGDYYRYLA+ A G S + Y+ A EI+ A++ PTHPI G + F
Sbjct: 123 YYKMKGDYYRYLAEFAVGEKRQHSADQSLEGYKAASEIATAELAPTHPIRLGLALNFSVF 182
Query: 622 YYEI 633
YYEI
Sbjct: 183 YYEI 186
>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 193 bits (470), Expect = 2e-50
Identities = 97/185 (52%), Positives = 126/185 (68%), Gaps = 2/185 (1%)
Frame = +1
Query: 85 MSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVXARRSS 264
MS +E V AKLAEQAERY++M MK+V + +LS EERNLLSVAYKN++ ARR+S
Sbjct: 1 MSNSRENSVYLAKLAEQAERYEEMVENMKKVACSNDKLSVEERNLLSVAYKNIIGARRAS 60
Query: 265 WRVISSIEQK--TXGSERKQQMAKEYXVKVQKELXXICYDVLGLLDKHLIPKASNPXSKV 438
WR+ISSIEQK + G+ R+ + KEY K++ EL IC+DVL +L+KHLIP A+ SKV
Sbjct: 61 WRIISSIEQKEESRGNTRQAALIKEYRKKIEDELSDICHDVLSVLEKHLIPAATTGESKV 120
Query: 439 FYLKMKGDYYRYLAQVATGXTXHSVVQDSQKAYQDAFEISKAKMQPTHPIXAGSGVKFLS 618
FY KMKGDYYRYLA+ G S +AY+ A +I+ A++ PT P+ G + F
Sbjct: 121 FYYKMKGDYYRYLAEFTVGEVCKEAADSSLEAYKAASDIAVAELPPTDPMRLGLALNFSV 180
Query: 619 LYYEI 633
YYEI
Sbjct: 181 FYYEI 185
>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 31.9 bits (69), Expect = 0.081
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Frame = +1
Query: 88 SVDKEELVQRAKLAEQAERYDDMAAAMKEVT--ETGVELSNEERN-LLSVAYKNVVXARR 258
SV + ++ K ++ E + ++ + +K V+ ET E+SN+E N LL + YK V
Sbjct: 3 SVSNVSVNEQGKFNDKEEGFSNLKS-LKHVSHSETDFEVSNDEDNQLLELGYKPVFKREF 61
Query: 259 SSWRVIS 279
S+W S
Sbjct: 62 STWATFS 68
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 30.3 bits (65), Expect = 0.25
Identities = 24/104 (23%), Positives = 42/104 (40%)
Frame = +1
Query: 61 ISSLPSSTMSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKN 240
I S+ S S EEL+ R + + Y+ MA + E E ++ + LLS Y N
Sbjct: 2998 IMSITMSDSSAYGEELM-RERFEHLLKAYEKMALMVAEQEEFNAKIEDMALKLLSEKYDN 3056
Query: 241 VVXARRSSWRVISSIEQKTXGSERKQQMAKEYXVKVQKELXXIC 372
+R+ + +E+ + EY +++ L C
Sbjct: 3057 EAYQAELFYRLSNCVEKVLHNKISITDLKTEYEEILEQTLKKEC 3100
>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 25.4 bits (53), Expect = 7.1
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +2
Query: 32 FSPSDK-GISELVLFHRPRCPSTRKNWCNVPNWPNKLSDMTT 154
FSP +K + +L LFH + PS+++ V N + SD +T
Sbjct: 162 FSPPEKPSMKDLALFHGNKSPSSKETIPKVSN--SNSSDTST 201
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 25.0 bits (52), Expect = 9.3
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 47 KGISELVLFHRPRCPSTRKNWCNVPNW 127
+G+ + L RC +T CNVP W
Sbjct: 694 EGVRKSALSSLWRCATTYYKVCNVPQW 720
>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
L18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 187
Score = 25.0 bits (52), Expect = 9.3
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +1
Query: 391 LDKHLIPKA--SNPXSKVFYLKMKGDYYRYLAQ 483
+++H + K+ S P S+ YLK+ YR+LA+
Sbjct: 5 IERHHVKKSQRSKPASENVYLKLLVKLYRFLAR 37
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,508,323
Number of Sequences: 5004
Number of extensions: 45262
Number of successful extensions: 137
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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