Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_E18
(649 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 66 4e-12
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 54 2e-08
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 51 1e-07
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 41 1e-04
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 40 3e-04
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 39 5e-04
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 39 7e-04
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 38 0.001
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 37 0.002
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 37 0.002
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 37 0.003
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 36 0.004
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 36 0.007
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 35 0.012
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 35 0.012
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 33 0.027
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 33 0.035
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch... 33 0.035
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 33 0.035
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 32 0.062
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 31 0.11
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 31 0.11
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 31 0.14
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 31 0.14
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos... 30 0.25
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 30 0.33
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 30 0.33
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 30 0.33
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 29 0.44
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 29 0.44
SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces... 29 0.58
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 29 0.76
SPBC8D2.09c |||U2 snRNP-associated protein Msl1 |Schizosaccharom... 29 0.76
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo... 28 1.0
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 27 1.8
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 27 3.1
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom... 26 4.1
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 26 4.1
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 5.4
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 26 5.4
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 25 9.4
SPAC328.08c |||tubulin specific chaperone cofactor C |Schizosacc... 25 9.4
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 66.1 bits (154), Expect = 4e-12
Identities = 48/171 (28%), Positives = 79/171 (46%), Gaps = 18/171 (10%)
Frame = +1
Query: 151 IFIGNLSDKTTEADLRPLFEKYGTVVXCDIVRN--------YGFVHMENEQVGREAIQNL 306
+++G L TEA L LF G V + R+ Y +V+ N + G +A+ L
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141
Query: 307 NGELVHGQXXXXXXXXSRKAPSTP---TTKIFVGNLTDKTRAPEVRELFXKFGTVVECDI 477
N L+ G+ S++ PS T +F+ NL + + F FG ++ C +
Sbjct: 142 NYTLIKGRPCRIMW--SQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKV 199
Query: 478 V-------RNYGFVHLDATGDVNDAIKXLNGMMVDGQPMKVQLSTSRVRQR 609
+ YGFVH D+ N AI+ +NGM+++ + + V SR R+R
Sbjct: 200 AVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSR-RER 249
Score = 54.4 bits (125), Expect = 1e-08
Identities = 40/168 (23%), Positives = 70/168 (41%), Gaps = 21/168 (12%)
Frame = +1
Query: 139 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVXCDIV-------RNYGFVHMENEQVGREAI 297
GT +FI NL L F +G ++ C + + YGFVH ++ + AI
Sbjct: 166 GTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAI 225
Query: 298 QNLNGELVHGQXXXXXXXXSRKAPSTPT-------TKIFVGNLTDKTRAPEVRELFXKFG 456
+++NG L++ + SR+ + T +++ NL + E +LF +FG
Sbjct: 226 EHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFG 285
Query: 457 TVVECDIV-------RNYGFVHLDATGDVNDAIKXLNGMMVDGQPMKV 579
+ +V R +GFV+ A+ LN G+ + V
Sbjct: 286 EITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYV 333
Score = 47.2 bits (107), Expect = 2e-06
Identities = 40/184 (21%), Positives = 75/184 (40%), Gaps = 31/184 (16%)
Frame = +1
Query: 151 IFIGNLSDKTTEADLRPLFEKYGTVVXCDIV-------RNYGFVHMENEQVGREAIQNLN 309
++I NL + TE + LF ++G + +V R +GFV+ N + ++A+ LN
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELN 322
Query: 310 GELVHGQXXXXXXXXSRKAPSTPTTK-----------------IFVGNLTDKTRAPEVRE 438
+ G+ + K +F+ NL D+ ++
Sbjct: 323 DKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKA 382
Query: 439 LFXKFGTVVECDIV-------RNYGFVHLDATGDVNDAIKXLNGMMVDGQPMKVQLSTSR 597
F FGT+ I+ + +GFV + N A+ +N M+ G+P+ V L+ +
Sbjct: 383 EFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRK 442
Query: 598 VRQR 609
+R
Sbjct: 443 EVRR 446
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 53.6 bits (123), Expect = 2e-08
Identities = 43/173 (24%), Positives = 83/173 (47%), Gaps = 19/173 (10%)
Frame = +1
Query: 148 KIFIGNLSDKTTEADLRPLFEKYGTVVXCDIVRN--------YGFVHMENEQVGREAI-- 297
K+FIG L+ +TT+ LR FE++G V+ C ++R+ +GF+ +N + E +
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK 223
Query: 298 -QNLNGELVHGQXXXXXXXXSRKAPSTPTTKIFVGNLTDKTRAPEVRELFXKFGTVVECD 474
+L+G+++ + + T K+FVG + E R F +FG V++
Sbjct: 224 EHHLDGKIIDPKRAIP------REEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDAT 277
Query: 475 IV--------RNYGFVHLDATGDVNDAIKXLNGMMVDGQPMKVQLSTSRVRQR 609
++ R +GFV + V +A + + G+P++V+ +T + R
Sbjct: 278 LMMDKDTGRPRGFGFVTYENESAV-EATMSQPYITIHGKPVEVKRATPKASLR 329
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 51.2 bits (117), Expect = 1e-07
Identities = 34/163 (20%), Positives = 70/163 (42%), Gaps = 18/163 (11%)
Frame = +1
Query: 148 KIFIGNLSDKTTEADLRPLFEKYGTVVXCDIVRNYGFVHMENEQVGREAIQNLNG----- 312
++F+G + + T D+ F+ YG ++ C ++ +GFV +E+ + R+ + + G
Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQILDCKLMNGFGFVEVEDARDARDIVNDFQGKEFMG 64
Query: 313 -----ELVHGQXXXXXXXXSRKAPSTPTT-----KIFVGNLTDKTRAPEVRELFXKFGTV 462
E G+ A P ++ V NL++ +++++ K G
Sbjct: 65 SRIVVEPARGERRRRENFRESAASKYPRPRRTGFRLIVENLSEDVSWQDLKDVMRKAGEP 124
Query: 463 VECDIVR---NYGFVHLDATGDVNDAIKXLNGMMVDGQPMKVQ 582
D R G V D+ +A+ LNG ++ GQ + ++
Sbjct: 125 TFTDAHRENPGAGVVEFSTEEDMRNALTSLNGEVIKGQAVTLR 167
Score = 44.0 bits (99), Expect = 2e-05
Identities = 17/76 (22%), Positives = 38/76 (50%)
Frame = +1
Query: 382 TKIFVGNLTDKTRAPEVRELFXKFGTVVECDIVRNYGFVHLDATGDVNDAIKXLNGMMVD 561
T++FVG + + ++ + F +G +++C ++ +GFV ++ D D + G
Sbjct: 4 TRLFVGRIPPQATREDMMDFFKGYGQILDCKLMNGFGFVEVEDARDARDIVNDFQGKEFM 63
Query: 562 GQPMKVQLSTSRVRQR 609
G + V+ + R+R
Sbjct: 64 GSRIVVEPARGERRRR 79
Score = 38.3 bits (85), Expect = 0.001
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Frame = +1
Query: 145 FKIFIGNLSDKTTEADLRPLFEKYGTVVXCDIVR---NYGFVHMENEQVGREAIQNLNGE 315
F++ + NLS+ + DL+ + K G D R G V E+ R A+ +LNGE
Sbjct: 98 FRLIVENLSEDVSWQDLKDVMRKAGEPTFTDAHRENPGAGVVEFSTEEDMRNALTSLNGE 157
Query: 316 LVHGQ 330
++ GQ
Sbjct: 158 VIKGQ 162
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 41.1 bits (92), Expect = 1e-04
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Frame = +1
Query: 97 FFVHSNP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVXCDIV--RNYGFVHME 270
F+ + P + T +F+G LS +E +L+ LF+ +G +V I + GFV
Sbjct: 287 FYSAAQPVPQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFV 346
Query: 271 NEQVGREAIQNLNG 312
N Q AI L G
Sbjct: 347 NRQSAEIAINQLQG 360
Score = 34.7 bits (76), Expect = 0.012
Identities = 37/173 (21%), Positives = 68/173 (39%), Gaps = 24/173 (13%)
Frame = +1
Query: 151 IFIGNLSDKTTEADLRPLFEKYGTVVXCDIVRN--------YGFVHMENEQVGREAIQNL 306
+++G L TEA ++ ++ G V ++RN Y FV + A+ ++
Sbjct: 95 LWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAM-SM 153
Query: 307 NGELVHGQXXXXXXXXS-------RKAPSTPTTKIFVGNLTDKTRAPEVRELFX------ 447
N + + G + + IFVG+L+ +V LF
Sbjct: 154 NNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSC 213
Query: 448 ---KFGTVVECDIVRNYGFVHLDATGDVNDAIKXLNGMMVDGQPMKVQLSTSR 597
K T + ++ R YGFV D A+ + G + +P++V L+T +
Sbjct: 214 KSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPK 266
Score = 31.5 bits (68), Expect = 0.11
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Frame = +1
Query: 145 FKIFIGNLSDKTTEADLRPLF-EKYGTVVXCDIV--------RNYGFVHMENEQVGREAI 297
+ IF+G+LS E D+ LF +Y + I+ R YGFV +E + A+
Sbjct: 186 YSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSAL 245
Query: 298 QNLNGEL 318
+ G++
Sbjct: 246 AEMQGQI 252
Score = 29.5 bits (63), Expect = 0.44
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Frame = +1
Query: 373 TPTTKIFVGNLTDKTRAPEVRELFXKFGTVVECDIV--RNYGFVHLDATGDVNDAIKXLN 546
T + +FVG L+ E++ LF FG +V I + GFV AI L
Sbjct: 300 TANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQLQ 359
Query: 547 GMMVDGQPMKVQLSTSRVRQRP 612
G + +++LS R Q P
Sbjct: 360 GYPLGNS--RIRLSWGR-NQNP 378
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 39.9 bits (89), Expect = 3e-04
Identities = 43/180 (23%), Positives = 71/180 (39%), Gaps = 31/180 (17%)
Frame = +1
Query: 151 IFIGNLSDKTTEADLRPLFEKYGTVVXCDIVRN--------YGFVHMENEQVGREAIQNL 306
+F+ NL+ +T + DL F G + +V N YGFV + + A + L
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66
Query: 307 NGELVHGQXXXXXXXXSRKAPSTPTT---------------KIFVGNLTDKTRAPEVREL 441
+ +HG+ RK T ++ + NL + P+ E
Sbjct: 67 KNKKLHGRILRLDFATPRKRSEVDTDQNKAVKKTIRQDNRPRLIIRNLPWSIKKPQHLEP 126
Query: 442 -FXKFGTVVECDI-------VRNYGFVHLDATGDVNDAIKXLNGMMVDGQPMKVQLSTSR 597
F KFG V E I + + FV + +A+ LNG +DG+P+ V + S+
Sbjct: 127 HFSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDWAVSK 186
Score = 32.3 bits (70), Expect = 0.062
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 8/80 (10%)
Frame = +1
Query: 388 IFVGNLTDKTRAPEVRELFXKFGTVVECDIVRN--------YGFVHLDATGDVNDAIKXL 543
+FV NL +T+ ++ F G + +V N YGFV D A K L
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66
Query: 544 NGMMVDGQPMKVQLSTSRVR 603
+ G+ +++ +T R R
Sbjct: 67 KNKKLHGRILRLDFATPRKR 86
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 39.1 bits (87), Expect = 5e-04
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Frame = +1
Query: 151 IFIGNLSDKTTEADLRPLFEKYGTVVXCDIVRN--------YGFVHMENEQVGREAIQNL 306
+F+ ++ + E +L+ +F K+GTV I+R +GF+ + AI NL
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNL 162
Query: 307 NGELVHGQXXXXXXXXSRKAPSTPTTKIFVG 399
N + +G+ R P +PT ++G
Sbjct: 163 NSQEFYGR-VLNVQKAKRSRPHSPTPGKYMG 192
Score = 36.3 bits (80), Expect = 0.004
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Frame = +1
Query: 388 IFVGNLTDKTRAPEVRELFXKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKXL 543
+FV + + + E++++F KFGTV I+ R +GF+ + AI L
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNL 162
Query: 544 NGMMVDGQPMKVQLSTSRVRQRPGMGXP 627
N G+ + VQ + R RP P
Sbjct: 163 NSQEFYGRVLNVQKAK---RSRPHSPTP 187
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 38.7 bits (86), Expect = 7e-04
Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 8/86 (9%)
Frame = +1
Query: 376 PTTKIFVGNLTDKTRAPEVRELFXKFGTVVECDIVRN--------YGFVHLDATGDVNDA 531
P +FV L T+ ++ +F +FG ++ C ++R+ Y F+ D V A
Sbjct: 242 PENVLFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKA 301
Query: 532 IKXLNGMMVDGQPMKVQLSTSRVRQR 609
+ +++D + V S S R R
Sbjct: 302 YFKMQNVLIDDSRIHVDFSQSVARYR 327
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 37.9 bits (84), Expect = 0.001
Identities = 38/184 (20%), Positives = 71/184 (38%), Gaps = 32/184 (17%)
Frame = +1
Query: 142 TFKIFIGNLSDKTTEADLRPLFEKYGTVVXCDIV--------RNYGFVHMENEQVGREAI 297
T +F+G LS + L FE+YGT+V ++ + YG+V E + + A+
Sbjct: 262 TCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAV 321
Query: 298 QNLNGELVHGQXXXXXXXXSRKAP----------------STPTTKIFVGNLTDKTRAPE 429
+ + G+ R A S P+ +FVGNL+ +
Sbjct: 322 AANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLSFNATEDD 381
Query: 430 VRELFXKFGTVVECDI--------VRNYGFVHLDATGDVNDAIKXLNGMMVDGQPMKVQL 585
+ F G + + ++ +G+V ++ +NG + G+P ++
Sbjct: 382 LSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVE-MNGHFIAGRPCRLDF 440
Query: 586 STSR 597
ST R
Sbjct: 441 STPR 444
Score = 28.7 bits (61), Expect = 0.76
Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
Frame = +1
Query: 370 STPTTKIFVGNLTDKTRAPEVRELFXKFGTVVECDIV--------RNYGFVHLDATGDVN 525
S T +FVG L+ + + F ++GT+V ++ + YG+V +
Sbjct: 259 SNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAK 318
Query: 526 DAIKXLNGMMVDGQPMKVQLSTSR 597
A+ +DG+ + + LS R
Sbjct: 319 AAVAANGTKEIDGRMVNLDLSNPR 342
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 37.1 bits (82), Expect = 0.002
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 13/89 (14%)
Frame = +1
Query: 370 STPTT---KIFVGNLTDKT--RAPEVRELFXKFGTVVEC--------DIVRNYGFVHLDA 510
STPT +FV NL D ++ ELF KFG + C +I + YGFV
Sbjct: 412 STPTIDPCNLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSH 471
Query: 511 TGDVNDAIKXLNGMMVDGQPMKVQLSTSR 597
+ AI LNG++ + + V + R
Sbjct: 472 PFEAVQAINTLNGVLFGKKRLFVNYAEKR 500
Score = 31.1 bits (67), Expect = 0.14
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 10/66 (15%)
Frame = +1
Query: 151 IFIGNLSDKTT--EADLRPLFEKYGTVVXC--------DIVRNYGFVHMENEQVGREAIQ 300
+F+ NL D L LF K+G + C +I + YGFV + +AI
Sbjct: 421 LFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAIN 480
Query: 301 NLNGEL 318
LNG L
Sbjct: 481 TLNGVL 486
Score = 27.9 bits (59), Expect = 1.3
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 13/78 (16%)
Frame = +1
Query: 388 IFVGNLTDKTRAPEVRELFXKFGTVVECDIVRN-------------YGFVHLDATGDVND 528
I+VGNL ++ ++ ELF FG + ++ + F+ + ++
Sbjct: 22 IYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCSADN 81
Query: 529 AIKXLNGMMVDGQPMKVQ 582
AI LNG G +KV+
Sbjct: 82 AIASLNGSSFQGNTLKVE 99
Score = 26.6 bits (56), Expect = 3.1
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 13/72 (18%)
Frame = +1
Query: 151 IFIGNLSDKTTEADLRPLFEKYGTVVXCDIVRN-------------YGFVHMENEQVGRE 291
I++GNL +DL LFE +G ++ + F+ EN+
Sbjct: 22 IYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCSADN 81
Query: 292 AIQNLNGELVHG 327
AI +LNG G
Sbjct: 82 AIASLNGSSFQG 93
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 37.1 bits (82), Expect = 0.002
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 12/88 (13%)
Frame = +1
Query: 385 KIFVGNLTDKTRAPEVRELFXKFGTVVECDI----VR--------NYGFVHLDATGDVND 528
++FVG L+ T+ E+R LF GTV + I VR FV + DV+
Sbjct: 45 RVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDK 104
Query: 529 AIKXLNGMMVDGQPMKVQLSTSRVRQRP 612
AI+ LNG +D + + VQ V+++P
Sbjct: 105 AIETLNGKTLDDREIVVQ-KARPVQEQP 131
Score = 35.1 bits (77), Expect = 0.009
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 12/69 (17%)
Frame = +1
Query: 145 FKIFIGNLSDKTTEADLRPLFEKYGTVVXCDI----VR--------NYGFVHMENEQVGR 288
F++F+G LS T ++++R LFE GTV I VR FV N++
Sbjct: 44 FRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVD 103
Query: 289 EAIQNLNGE 315
+AI+ LNG+
Sbjct: 104 KAIETLNGK 112
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 36.7 bits (81), Expect = 0.003
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +1
Query: 151 IFIGNLSDKTTEADLRPLFEKYGTVVXCDIV--RNYGFVHMENEQVGREAIQNL 306
+F+GNL + TE ++R E +G + IV RN FVH N +A+Q L
Sbjct: 208 VFLGNLPNGITEDEIREDLEPFGPIDQIKIVTERNIAFVHFLNIAAAIKAVQEL 261
Score = 31.5 bits (68), Expect = 0.11
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Frame = +1
Query: 388 IFVGNLTDKTRAPEVRELFXKFGTVVECDIV--RNYGFVHLDATGDVNDAIKXLNGMMVD 561
+F+GNL + E+RE FG + + IV RN FVH ++ AIK + + ++
Sbjct: 208 VFLGNLPNGITEDEIREDLEPFGPIDQIKIVTERNIAFVHF---LNIAAAIKAVQELPLN 264
Query: 562 GQPMKVQLSTSRVRQRPGMGXP 627
+ K ++ R R G+ P
Sbjct: 265 PKWSKRRIYYGRDRCAVGLKQP 286
Score = 26.6 bits (56), Expect = 3.1
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +1
Query: 133 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVXCDIVR--NYGFVHMENEQVGREAIQNL 306
G + I+IGN D T L+ FE++G + + R N FV+ + AI +
Sbjct: 410 GGASRNIYIGNADDSLTIERLKEDFEEFGEIEYVNFFREKNCAFVNFTSLASAINAIDRI 469
Score = 25.4 bits (53), Expect = 7.1
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +1
Query: 388 IFVGNLTDKTRAPEVRELFXKFGTVVECDIVR--NYGFVHLDATGDVNDAI 534
I++GN D ++E F +FG + + R N FV+ + +AI
Sbjct: 416 IYIGNADDSLTIERLKEDFEEFGEIEYVNFFREKNCAFVNFTSLASAINAI 466
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 36.3 bits (80), Expect = 0.004
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +1
Query: 388 IFVGNLTDKTRAPEVRELFXKFGTVVECDIV--RNYGFVHLDATGDVNDAIKXLNGMMVD 561
+F+GNL E+ E F KFG + I+ +N FVH ++ DAIK + + D
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKNIAFVHF---LNIRDAIKVVRTLSCD 357
Score = 31.1 bits (67), Expect = 0.14
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +1
Query: 151 IFIGNLSDKTTEADLRPLFEKYGTVVXCDIV--RNYGFVHMENEQVGREAIQNLN 309
+FIGNL E ++ F K+G + I+ +N FVH N + + ++ L+
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKNIAFVHFLNIRDAIKVVRTLS 355
Score = 25.4 bits (53), Expect = 7.1
Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = +1
Query: 151 IFIGNLSDKTTEADLRPLFEKYGTVVXCDIVRN--YGFVHMENEQVGREAIQNL 306
++ ++SD T +L + +YG + ++N GFV N +A+ L
Sbjct: 502 VYFSHISDSLTTEELELILRQYGEIESIKYLKNRSSGFVAYTNISNAMKAVNGL 555
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 35.5 bits (78), Expect = 0.007
Identities = 39/155 (25%), Positives = 62/155 (40%), Gaps = 25/155 (16%)
Frame = +1
Query: 190 DLRPLFEKYGTVVXCDIVRNY-------GFVHMENEQVGREAIQNLNGELVHGQXXXXXX 348
DL+ LF + G+V+ DI N G V M + + AIQ L+ G+
Sbjct: 198 DLKDLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHAIQMLHNTDFMGRTLEVRL 257
Query: 349 XXS----------RKAPSTPTTK-IFVGNLTDKTRAPEVRELFXKFGTVVECDIV----- 480
P P + I+VGNL T + +LF G+V+ I
Sbjct: 258 DRFAHHKIEDLVYHAYPHGPCSDCIYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTG 317
Query: 481 --RNYGFVHLDATGDVNDAIKXLNGMMVDGQPMKV 579
+ +G V + D +I+ LNG G+P+++
Sbjct: 318 RSKGFGVVQFENENDAASSIEKLNGYRYGGRPLQL 352
Score = 35.1 bits (77), Expect = 0.009
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Frame = +1
Query: 151 IFIGNLSDKTTEADLRPLFEKYGTVVXCDIV-------RNYGFVHMENEQVGREAIQNLN 309
I++GNL T++ +L LF G+V+ I + +G V ENE +I+ LN
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLN 341
Query: 310 G 312
G
Sbjct: 342 G 342
Score = 29.9 bits (64), Expect = 0.33
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = +1
Query: 385 KIFVGNLTDKTRAPEVRELFXKFGTVVECDIV 480
+++VGNL+ + R E++E + G V+ C+I+
Sbjct: 67 RVYVGNLSYQVRWFELKEFMGQVGNVLNCEIL 98
Score = 27.9 bits (59), Expect = 1.3
Identities = 41/191 (21%), Positives = 79/191 (41%), Gaps = 45/191 (23%)
Frame = +1
Query: 148 KIFIGNLSDKTTEADLRPLFEKYGTVVXCDIV-------RNYGFVHMENEQVGREAIQNL 306
++++GNLS + +L+ + G V+ C+I+ + + + R AI+ L
Sbjct: 67 RVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIKTL 126
Query: 307 N-----GELVH-----------GQXXXXXXXXSRKAPSTPTTKIFVGNLTD--------- 411
+ G LV+ G S S P ++FVGN++
Sbjct: 127 SNQKFMGRLVYIREDREQNARFGSSSVSPSASSNGKDSEPDRQLFVGNVSSISNPLYSFP 186
Query: 412 KTRAP------EVRELFXKFGTVVECDI-------VRNYGFVHLDATGDVNDAIKXLNGM 552
+T P ++++LF + G+V+ DI R G V + + + AI+ L+
Sbjct: 187 RTLLPYNVRWQDLKDLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHAIQMLHNT 246
Query: 553 MVDGQPMKVQL 585
G+ ++V+L
Sbjct: 247 DFMGRTLEVRL 257
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 34.7 bits (76), Expect = 0.012
Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = +1
Query: 382 TKIFVGNLTDKTRAPE-VRELFXKFGTVVECDIVRNYGFVHLDATGDVNDAIKXLNGMMV 558
+++F+G+L K+ + + ++F +G + + + NYGFV D A+ G V
Sbjct: 363 SRLFLGHLNTKSLSKRNLWKVFKIYGPLAQIVLKANYGFVQFFTNEDCARALNAEQGNFV 422
Query: 559 DGQPMKVQLS 588
GQ + +++S
Sbjct: 423 RGQKLHLEIS 432
Score = 34.3 bits (75), Expect = 0.015
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +1
Query: 148 KIFIGNLSDKT-TEADLRPLFEKYGTVVXCDIVRNYGFVHMENEQVGREAIQNLNGELVH 324
++F+G+L+ K+ ++ +L +F+ YG + + NYGFV + A+ G V
Sbjct: 364 RLFLGHLNTKSLSKRNLWKVFKIYGPLAQIVLKANYGFVQFFTNEDCARALNAEQGNFVR 423
Query: 325 GQ 330
GQ
Sbjct: 424 GQ 425
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 34.7 bits (76), Expect = 0.012
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Frame = +1
Query: 385 KIFVGNLTDKTRAPEVRELFXKFGTVVECDIVRN-------YGFVHLDATGDVNDAIKXL 543
++FVGNL + + + F ++ ++V+ +VR+ +GFV + A +
Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWREK 90
Query: 544 NGMMVDGQPMKVQLSTSRVR 603
NG + +P+K+ +TS V+
Sbjct: 91 NGKYIGSRPVKLSRATSDVK 110
Score = 32.3 bits (70), Expect = 0.062
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Frame = +1
Query: 145 FKIFIGNLSDKTTEADLRPLFEKYGTVVXCDIVRN-------YGFVHMENEQVGREAIQN 303
F++F+GNL + + L F +Y ++V +VR+ +GFV ++ +A +
Sbjct: 30 FRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWRE 89
Query: 304 LNGELV 321
NG+ +
Sbjct: 90 KNGKYI 95
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 33.5 bits (73), Expect = 0.027
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 9/84 (10%)
Frame = +1
Query: 106 HSNP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEK-YGTVVXCDIV--------RNYGF 258
H+N S+ P F IF+G+L T ++DL F Y + I+ R YGF
Sbjct: 172 HNNFVSRDP---EFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGF 228
Query: 259 VHMENEQVGREAIQNLNGELVHGQ 330
V +E+ + A+ ++ G L G+
Sbjct: 229 VRFSSEKEQQHALMHMQGYLCQGR 252
Score = 30.7 bits (66), Expect = 0.19
Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 9/85 (10%)
Frame = +1
Query: 376 PTTKIFVGNLTDKTRAPEVRELFXK-FGTVVECDIV--------RNYGFVHLDATGDVND 528
P IFVG+L T ++ F + + I+ R YGFV + +
Sbjct: 180 PEFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQH 239
Query: 529 AIKXLNGMMVDGQPMKVQLSTSRVR 603
A+ + G + G+P+++ +++ + R
Sbjct: 240 ALMHMQGYLCQGRPLRISVASPKSR 264
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 33.1 bits (72), Expect = 0.035
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Frame = +1
Query: 151 IFIGNLSDKTTEADLRPLFEKYGTVVXCDI-----VRNYGFVHMENEQVGREAIQNLNG 312
+FI NLS K T ++ LF +YG V + R FV EN Q R A + L+G
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQIRLGNTVQTRGTAFVVYENVQDARRACEKLSG 72
>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 593
Score = 33.1 bits (72), Expect = 0.035
Identities = 17/57 (29%), Positives = 33/57 (57%)
Frame = -2
Query: 585 QLHLHGLSVDHHTVQLFDSVVHIARRVQMHEAVVTHDIALDDRPELXKQLADFGRAR 415
QLH ++ H + Q+F+++ ++ R +H + +I L++ +L + ADFG AR
Sbjct: 368 QLHFTPGNIKHLSKQIFEALAYLHHRGVLHRDIKGSNILLNNNGDL--KFADFGLAR 422
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 33.1 bits (72), Expect = 0.035
Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Frame = +1
Query: 376 PTTKIFVGNLTDKTRAPEVRELFXKFGTVVECDIVRN--------YGFVHLDATGDVNDA 531
P +F+ L+ T+ ++ F ++G + +VRN Y FV + D+ A
Sbjct: 98 PYKTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVA 157
Query: 532 IKXLNGMMVDGQPMKVQLSTSR 597
K G+M++G+ + V + R
Sbjct: 158 YKASAGLMLNGRRIVVDVERGR 179
Score = 30.3 bits (65), Expect = 0.25
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Frame = +1
Query: 151 IFIGNLSDKTTEADLRPLFEKYGTVVXCDIVRN--------YGFVHMENEQVGREAIQNL 306
+F+ LS T E+D+ F +YG + +VRN Y FV E E+ + A +
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKAS 161
Query: 307 NGELVHGQ 330
G +++G+
Sbjct: 162 AGLMLNGR 169
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 32.3 bits (70), Expect = 0.062
Identities = 39/175 (22%), Positives = 68/175 (38%), Gaps = 24/175 (13%)
Frame = +1
Query: 145 FKIFIGNLSDKTTEADLRPLFEKY----GTVVXC--DIVRNYGFVHMENEQVGREAIQNL 306
+ +FI N+ + +E D++ LF++Y V+ C + F+ + NE + A +
Sbjct: 73 YMLFISNIDPEVSENDIKYLFQRYNFISARVLRCVDGTSTSIAFIWLANESDIQNAQVEM 132
Query: 307 NGE-------LVHGQXXXXXXXXSRKA-PSTP----------TTKIFVGNLTDKTRAPEV 432
G LVH S TP T ++V L + E+
Sbjct: 133 QGAFCLKRSILVHSVKSDKNTYLSSPGFYGTPQPLNQFTDPNNTAVYVHQLPENITTQEL 192
Query: 433 RELFXKFGTVVECDIVRNYGFVHLDATGDVNDAIKXLNGMMVDGQPMKVQLSTSR 597
R F FG ++ + N G + AI +N + G +++QLS +R
Sbjct: 193 RSYFLHFGEILYTQVNNNSGRIVFAQRYFAEQAINEMNNFPLHG--VRIQLSWAR 245
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 31.5 bits (68), Expect = 0.11
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +1
Query: 388 IFVGNLTDKTRAPEVRELFXKFGTVVECDIVRNY--GFVHL 504
+F+G +T R P +R +F +FG+V + NY GF+ +
Sbjct: 408 LFLGGITRSVREPVLRSMFERFGSVQSLILNHNYRHGFLKM 448
Score = 30.3 bits (65), Expect = 0.25
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +1
Query: 151 IFIGNLSDKTTEADLRPLFEKYGTVVXCDIVRNY--GFVHMENEQVGREA 294
+F+G ++ E LR +FE++G+V + NY GF+ M +A
Sbjct: 408 LFLGGITRSVREPVLRSMFERFGSVQSLILNHNYRHGFLKMFRRDAAEKA 457
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 31.5 bits (68), Expect = 0.11
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +1
Query: 376 PTTKIFVGNLTDKTRAPEVRELFXKFGTVVECDIV--RNYGFVHLDATGDVNDAIKXLNG 549
PT ++VGNL A V F +GTV ++ ++ F++ D+ ++ LNG
Sbjct: 585 PTHALWVGNLPSGVSATTVATTFSAYGTVSSIRMLSHKHSAFLNFDSVETAKHVLEELNG 644
Query: 550 MMV 558
+
Sbjct: 645 KRI 647
Score = 30.3 bits (65), Expect = 0.25
Identities = 13/62 (20%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +1
Query: 142 TFKIFIGNLSDKTTEADLRPLFEKYGTVVXCDIV--RNYGFVHMENEQVGREAIQNLNGE 315
T +++GNL + + F YGTV ++ ++ F++ ++ + + ++ LNG+
Sbjct: 586 THALWVGNLPSGVSATTVATTFSAYGTVSSIRMLSHKHSAFLNFDSVETAKHVLEELNGK 645
Query: 316 LV 321
+
Sbjct: 646 RI 647
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 31.1 bits (67), Expect = 0.14
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Frame = +1
Query: 130 PGTGTFKIFIGNLSD-KTTEADLRPLFEKYGTVVXCDIVRN-----YGFVHMENEQVGRE 291
P + IF+G L T L LF KYG V+ C I+ + F+ +++Q
Sbjct: 360 PPIDPYSIFVGQLDPVNCTHYLLVDLFSKYGKVIDCKIIHQSKKPAFAFLRFDSQQAAYA 419
Query: 292 AI 297
A+
Sbjct: 420 AV 421
Score = 28.7 bits (61), Expect = 0.76
Identities = 16/78 (20%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Frame = +1
Query: 376 PTTKIFVGNLTDKTRAPE----VRELFXKFGTVVECDIVRN-----YGFVHLDATGDVND 528
P +FV +L E V++ F ++G ++ ++++ Y FV T D +
Sbjct: 77 PVACLFVASLNSSRSEEELTATVKDYFQQWGPLLHVKVLKDWLQRPYSFVQFQNTDDASK 136
Query: 529 AIKXLNGMMVDGQPMKVQ 582
A+ ++DG+ ++++
Sbjct: 137 ALSEAQNTILDGRHIRIE 154
Score = 25.4 bits (53), Expect = 7.1
Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 7/88 (7%)
Frame = +1
Query: 367 PSTPTTKIFVGNLTDKTRAPE--VRELFXKFGTVVECDIVRN-----YGFVHLDATGDVN 525
P IFVG L D + +LF K+G V++C I+ + F+ D+
Sbjct: 360 PPIDPYSIFVGQL-DPVNCTHYLLVDLFSKYGKVIDCKIIHQSKKPAFAFLRFDSQQAAY 418
Query: 526 DAIKXLNGMMVDGQPMKVQLSTSRVRQR 609
A+ +P++V+ R Q+
Sbjct: 419 AAVCGKTRSPHQKKPLRVEFRQLRPMQQ 446
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 31.1 bits (67), Expect = 0.14
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Frame = +1
Query: 151 IFIGNLSDKTTEADLRPLFEKYGTVVXCD-------IVRNYGFVHMENEQVGREAIQNLN 309
+ +GNL+ TE+ L F +G ++ + R+Y FV + + +EA++N+N
Sbjct: 8 VHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKEAMENMN 67
>SPBC8D2.01 |gsk31||serine/threonine protein kinase
Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 381
Score = 30.3 bits (65), Expect = 0.25
Identities = 16/62 (25%), Positives = 33/62 (53%)
Frame = -2
Query: 594 TRRQLHLHGLSVDHHTVQLFDSVVHIARRVQMHEAVVTHDIALDDRPELXKQLADFGRAR 415
TRR+ + LS+ + QLF ++ ++ H + ++ +D + + K L DFG A+
Sbjct: 116 TRRRKSIPNLSIKLYAFQLFRALAYLHSTGVCHRDIKPQNLLVDYKTGILK-LCDFGSAK 174
Query: 414 LV 409
++
Sbjct: 175 VL 176
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 29.9 bits (64), Expect = 0.33
Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 12/112 (10%)
Frame = +1
Query: 151 IFIGNLSDK--TTEADLRPLFEKYGTVVX----C----DIVRNYGFVHMENEQVGREAIQ 300
+++ NL D T ++ L LF +G+++ C I + YGFV + A
Sbjct: 384 LYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRAKD 443
Query: 301 NLNGELVHGQXXXXXXXXSRKAPSTPTTKIFVGN--LTDKTRAPEVRELFXK 450
LNG +V G+ RK+ + F N +++T + + LF K
Sbjct: 444 TLNGMMV-GKKRIFVCFAERKSDRIRRLQAFFANKPTSEQTAQQDNKALFVK 494
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 29.9 bits (64), Expect = 0.33
Identities = 13/62 (20%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Frame = +1
Query: 148 KIFIGNLSDKTTEADLRPLFEKYGTVVXCDIVRN-------YGFVHMENEQVGREAIQNL 306
++ + N+ T+ D++ +FE +G + + R+ +G++ N R A++ +
Sbjct: 341 RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKM 400
Query: 307 NG 312
NG
Sbjct: 401 NG 402
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1
Query: 151 IFIGNLSDKTTEADLRPLFEKYGTVVXCDIVRN 249
+F+ L+++ T +L FE+ G V IVR+
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRD 274
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 29.9 bits (64), Expect = 0.33
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 8/72 (11%)
Frame = +1
Query: 388 IFVGNLTDKTRAPEVRELFXKFGTVVECDI----VRN----YGFVHLDATGDVNDAIKXL 543
I++GNL +K + EL + G VV I VRN +GF DV A + L
Sbjct: 13 IYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQIL 72
Query: 544 NGMMVDGQPMKV 579
N + + G+P++V
Sbjct: 73 NQVKLFGKPIRV 84
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 29.5 bits (63), Expect = 0.44
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 376 PTTKIFVGNLTDKTRAPEVRELFXKFGTVVECDIVRN 486
P T++FV N++ + ++R F FG V + D+ N
Sbjct: 92 PPTQVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLN 128
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 148 KIFIGNLSDKTTEADLRPLFEKYGTVVXCDIVRN 249
++F+ N+S T LR F+ +G V D+ N
Sbjct: 95 QVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLN 128
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 29.5 bits (63), Expect = 0.44
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +1
Query: 394 VGNLTDKTRAPEVRELFXKFGTV 462
V NL+D TR E+R+LF +FG +
Sbjct: 206 VTNLSDDTREEELRDLFRRFGGI 228
>SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 183
Score = 29.1 bits (62), Expect = 0.58
Identities = 15/80 (18%), Positives = 32/80 (40%), Gaps = 4/80 (5%)
Frame = +1
Query: 382 TKIFVGNLTDKTRAPEVRELFXKFGTVVECDIVRNYG----FVHLDATGDVNDAIKXLNG 549
T + + NL T + +V FG ++ C + + G V ++ L+G
Sbjct: 100 TNVVIENLAPGTSSDDVAATLLNFGEILNCQVNDSQGKVRASVRFSTLASAQQVVQKLDG 159
Query: 550 MMVDGQPMKVQLSTSRVRQR 609
+ DG + + + ++R
Sbjct: 160 VTADGFKLSCYIKKNSKKRR 179
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 28.7 bits (61), Expect = 0.76
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +1
Query: 151 IFIGNLSDKTTEADLRPLFEKYGTV 225
+F+GNL +TT+ADL+ F + G +
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQI 254
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +1
Query: 376 PTTKIFVGNLTDKTRAPEVRELFXKFGTV 462
P++ +FVGNL +T +++E F + G +
Sbjct: 226 PSSILFVGNLDFETTDADLKEHFGQVGQI 254
>SPBC8D2.09c |||U2 snRNP-associated protein Msl1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 111
Score = 28.7 bits (61), Expect = 0.76
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
Frame = +1
Query: 151 IFIGNLSDKTTEADLRP----LFEKYGTVVXCDIV 243
+++ NL+DK + DLR LF YGTVV DIV
Sbjct: 6 LYVNNLNDKINKNDLRTALYMLFSTYGTVV--DIV 38
>SPAPB8E5.07c |||ribosome biogenesis protein
Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1163
Score = 28.3 bits (60), Expect = 1.0
Identities = 19/56 (33%), Positives = 25/56 (44%)
Frame = +2
Query: 128 CRAPVLSKSSSGTFLIKPQKPILDRYSKNTVRSXNAISSEITVSCTWKTNKSAAKP 295
CR+ VL T I ILD SK +V +A+S +T+ C K S P
Sbjct: 236 CRSCVLIVGQRSTNSILLVYQILDGLSKKSVDYTDAVSLRMTLICLQKLEPSEHDP 291
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 27.5 bits (58), Expect = 1.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 151 IFIGNLSDKTTEADLRPLFEKYGTV 225
+++GNLS TTE + LF K G +
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEI 58
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 26.6 bits (56), Expect = 3.1
Identities = 16/83 (19%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Frame = +1
Query: 361 KAPSTPTTKIFVGNLTDKTRAPEVRELFXKFGTV--------VECDIVRNYGFVHLDATG 516
++P P I V NLT + E+F +G + + ++ + Y ++
Sbjct: 92 RSPEEPLRTILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYVYHD 151
Query: 517 DVNDAIKXLNGMMVDGQPMKVQL 585
+A+ +N +DG+ + V +
Sbjct: 152 QAANAVDKMNNAELDGEELFVSI 174
>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 581
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -2
Query: 465 DDRPELXKQLADFGRARLVR*ITHEYFSGWRR 370
D + K+ AD A+L +THE GWRR
Sbjct: 473 DQKARKSKERADL-LAKLDNSLTHEQIEGWRR 503
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +1
Query: 487 YGFVHLDATGDVNDAIKXLNGMMVDGQPMKVQLS 588
+GFV A+ +NG ++DG ++++LS
Sbjct: 667 FGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLS 700
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
Frame = +1
Query: 151 IFIGNLSDKTTEADLRPLFEKYGTVVXCDIV--------RNYGFVHMENEQVGREAIQNL 306
+++GN+ + E + +F++ G V +V + YGF + A++NL
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNL 66
Query: 307 N 309
N
Sbjct: 67 N 67
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 25.8 bits (54), Expect = 5.4
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = +1
Query: 385 KIFVGNLTDKTRAPEVRELFXKFGTVVECDIV 480
+I+VG L+ + ++ F +FG+V +I+
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNLEII 37
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 218 VRSXNAISSEITVSCTWKTNKSAAK 292
VRS NA +I +S ++ NKSAA+
Sbjct: 803 VRSTNADMKKIKLSISFSQNKSAAR 827
>SPAC328.08c |||tubulin specific chaperone cofactor C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +2
Query: 119 NLKCR-APVLSKSSSGTFLIKPQKPILD 199
+L+C+ +PV+ +S +F K + PILD
Sbjct: 211 HLRCKTSPVIEESKEISFSYKDEHPILD 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,341,435
Number of Sequences: 5004
Number of extensions: 43506
Number of successful extensions: 218
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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