Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_E17
         (352 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0178 - 1223725-1223736,1223900-1224025,1224404-1224649,122...    28   2.4  
06_03_0352 - 19802826-19803148,19803232-19803457,19803549-19803932     27   5.5  
05_01_0135 + 908803-909059,913133-913187,913499-914047,914140-91...    26   7.2  

>02_01_0178 -
           1223725-1223736,1223900-1224025,1224404-1224649,
           1224731-1224922,1225059-1225138,1225233-1226826
          Length = 749

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 18/48 (37%), Positives = 27/48 (56%)
 Frame = +2

Query: 80  MITDIQLAVFSNILGVSIFLLVILYHYINANSSK*YRSIAAIVKALVS 223
           +ITDI+    +  L V +F   +  H +NA SS+ ++   A VK LVS
Sbjct: 438 LITDIEKIAEAAFLMVVVFSAEVTKHRLNAKSSEGFQPDVA-VKILVS 484


>06_03_0352 - 19802826-19803148,19803232-19803457,19803549-19803932
          Length = 310

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 18/70 (25%), Positives = 36/70 (51%)
 Frame = +2

Query: 41  HLI*FSLKHPTLKMITDIQLAVFSNILGVSIFLLVILYHYINANSSK*YRSIAAIVKALV 220
           H I   L   TL +  + Q+A+F +I+G       + + +  +  +   R   A++ +LV
Sbjct: 40  HFISRGLLVDTLHVTIEEQIAMFMHIVGHKWSNRSVGFEFYRSGETV-SRYFNAVLDSLV 98

Query: 221 SLIKNVLYIK 250
           S+ K ++YI+
Sbjct: 99  SISKELIYIR 108


>05_01_0135 +
           908803-909059,913133-913187,913499-914047,914140-914365,
           914446-914906
          Length = 515

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 15/60 (25%), Positives = 33/60 (55%)
 Frame = +2

Query: 71  TLKMITDIQLAVFSNILGVSIFLLVILYHYINANSSK*YRSIAAIVKALVSLIKNVLYIK 250
           TL +  + Q+A+F +I+G       + + +  +  +   R   A++ +LVS+ K ++YI+
Sbjct: 209 TLHVTVEEQIAMFMHIVGHKWCNRSVGFEFFRSGETV-SRYFNAVLDSLVSISKELIYIR 267


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,157,175
Number of Sequences: 37544
Number of extensions: 101654
Number of successful extensions: 182
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)