Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_E16
         (445 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    22   2.6  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    21   8.0  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    21   8.0  

>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +3

Query: 60  RCSPGFRVSQASAGELHVPCSCC 128
           RCS   +VS +   ++   C CC
Sbjct: 56  RCSSYLQVSGSKIWQMERSCMCC 78


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = +3

Query: 120 SCCIYRSGRCCVHRTPGVLCVLCIFSGC 203
           S C  R  R C +  P  LC+     GC
Sbjct: 44  SRCDGRCQRFCPNVVPKPLCIKICAPGC 71


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = +3

Query: 120 SCCIYRSGRCCVHRTPGVLCVLCIFSGC 203
           S C  R  R C +  P  LC+     GC
Sbjct: 44  SRCDGRCQRFCPNVVPKPLCIKICAPGC 71


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,908
Number of Sequences: 438
Number of extensions: 1436
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11574126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)