Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_E15
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.02c |p23fy||translationally controlled tumor protein ho...    96   4e-21
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    28   1.0  
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   4.1  
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce...    25   7.2  
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    25   7.2  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    25   7.2  
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    25   9.5  

>SPAC1F12.02c |p23fy||translationally controlled tumor protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 95.9 bits (228), Expect = 4e-21
 Identities = 57/132 (43%), Positives = 76/132 (57%)
 Frame = +2

Query: 203 DIQIEGFNPSAEEADEGTDSAVESGVDIVLNHRLXETYAFGDKKSYTLYLKDYMXXXXXX 382
           D+ I G NPSAE+A+E  +   E+  ++V + RL  T +F DKKSY  Y+K YM      
Sbjct: 42  DVDI-GANPSAEDAEENAEEGTETVNNLVYSFRLSPT-SF-DKKSYMSYIKGYMKAIKAR 98

Query: 383 XXXXAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESMDCDGMVAMMEYXDFDGTQIPIM 562
                P++V VF+ N    +K IL  FK+  F+ GESMD D MV +M Y + DG   P M
Sbjct: 99  LQESNPERVPVFEKNAIGFVKKILANFKDYDFYIGESMDPDAMVVLMNYRE-DGI-TPYM 156

Query: 563 MFFKHGLQXXKF 598
           +FFK GL   KF
Sbjct: 157 IFFKDGLVSEKF 168



 Score = 34.3 bits (75), Expect = 0.015
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +1

Query: 112 DEMFSDTYKMKLVDEVIYEVTGXLVTRAQG 201
           DE+ SD Y +K VD+++YE    +VT  QG
Sbjct: 11  DELVSDAYDLKEVDDIVYEADCQMVTVKQG 40


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -3

Query: 298 VVQDYVNSALDGRVRALVSLFSRRIKTLDLDISPVL 191
           V++D +NS LDG +  +    S R +T  LD+S ++
Sbjct: 341 VLEDQMNSLLDGSLYGICRPLSSRAQTSVLDLSDIV 376


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = -2

Query: 554 VFAYHQSLYIPSWQPC-HHN 498
           V A+ Q L++P W PC  HN
Sbjct: 336 VVAFTQGLFLPRWLPCIKHN 355


>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 481

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -3

Query: 478 ELKFLKPAEDVFHYFVHVCFKYFNLVR 398
           +  FLKP   ++ YF+ +  +Y +L+R
Sbjct: 175 QFDFLKPNNALYPYFMRIVQQYTSLIR 201


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 70  NPSK*RSIRTLSLADEMFSDTYKMKLVDE 156
           NP+  +  + +SLA E+ SD  + KL D+
Sbjct: 38  NPNGEKKFKEISLAYEVLSDPQRRKLYDQ 66


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -1

Query: 210 WISALCSRHQXTGHFVNNFIDQF 142
           W S  CS+   TG   +NFI  F
Sbjct: 216 WFSRRCSKINITGSVFDNFIPSF 238


>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -2

Query: 215 RSGYQPCALVTNXPVTS*ITSSTNFIL*VSENISSASDNV 96
           RS Y   A  +N P  + +T ST     +S+N SS+S+++
Sbjct: 337 RSAYSTSANYSNTPPRNTVTPSTARSSTLSQNPSSSSNSI 376


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,387,111
Number of Sequences: 5004
Number of extensions: 44175
Number of successful extensions: 104
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)