Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_E14
(616 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S... 28 1.2
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces... 28 1.2
SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces... 26 5.0
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ... 26 5.0
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S... 26 5.0
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa... 25 6.6
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo... 25 6.6
SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ... 25 8.7
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||... 25 8.7
SPCC594.04c |||steroid oxidoreductase superfamily protein|Schizo... 25 8.7
>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 27.9 bits (59), Expect = 1.2
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = -3
Query: 614 GXHSANVRSPGPAARMEARIRYR 546
G HS+++R P P+++ E ++R R
Sbjct: 283 GYHSSSIRDPRPSSKAEEKVRKR 305
>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 419
Score = 27.9 bits (59), Expect = 1.2
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Frame = -1
Query: 451 FFQVLVPTHQFHEYLFEISHGVHILIGGEDAGVGLGRFAVHRHRTARQQ-QAASNEYIEY 275
F + PTH F +YL S LI + V + + H + + R + S +Y E+
Sbjct: 146 FMNITDPTHGFVQYLDRNSSAKLGLISANSSNVIMAADSKHNYSSGRPSIRLQSTQYFEH 205
Query: 274 DFAIASVV 251
I ++
Sbjct: 206 GLFILDLI 213
>SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 289
Score = 25.8 bits (54), Expect = 5.0
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 328 RHRTARQQQAASNEYIEYDFA 266
R RT +Q + +YIEYDF+
Sbjct: 43 RKRTFDEQSEITKDYIEYDFS 63
>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 25.8 bits (54), Expect = 5.0
Identities = 10/42 (23%), Positives = 24/42 (57%)
Frame = +1
Query: 388 HHAKFRTGIRETDASVQVLGKNVRTGNEKGSGLLERLRSRTA 513
H+A + + ++ SV++ G ++ +EKG + ++R+ A
Sbjct: 607 HNAPKKKNLNDSLKSVELEGNGIKLSSEKGKNNVNKVRNDNA 648
>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 517
Score = 25.8 bits (54), Expect = 5.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 381 SSLAEKMQVLVLGDSPSIDTEPPGSSRPPAMSTS 280
SSL + M V DSP ++ E G S P M ++
Sbjct: 475 SSLDDLMSVTCFRDSPELNHESSGYSSAPLMPSN 508
>SPAC806.08c |mod21||gamma tubulin complex subunit
Mod21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 618
Score = 25.4 bits (53), Expect = 6.6
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = -2
Query: 459 SNIFSKYLYRRISFTNTCSKFRMVSISSLAE 367
S FS++ Y F NTC F + S E
Sbjct: 460 SKRFSRFYYGHYVFVNTCHNFFLTLYQSFTE 490
>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1000
Score = 25.4 bits (53), Expect = 6.6
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = -2
Query: 429 RISFTNTCSKFRMVSISSLAEKMQVLVLGDSPSIDTEPPGSSRPPAMSTSN 277
+ S + V S+L + +VL L P P G PA++TSN
Sbjct: 69 KASIPTNINGLSQVKPSALEKSQEVLSLQKLPIKGRRPAGRRGRPALNTSN 119
>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 557
Score = 25.0 bits (52), Expect = 8.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 33 GSYITCLISTILYESXGXKTSIIG 104
GS+ CLIS+ + G + SIIG
Sbjct: 68 GSFFGCLISSPTTDRIGKRNSIIG 91
>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 644
Score = 25.0 bits (52), Expect = 8.7
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -3
Query: 515 CAVRDRSLSSRPEPFSFPVRTFFPSTCTDASVSRIPV 405
CAV RSL R + S + F C + +V PV
Sbjct: 568 CAVVQRSLERRNQSTSAACQQCFSQYCWNGTVDNTPV 604
>SPCC594.04c |||steroid oxidoreductase superfamily
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 338
Score = 25.0 bits (52), Expect = 8.7
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -1
Query: 475 LFHFLFEHFFQVLVPTHQFHEYLFEISHGVHILIGGEDA 359
LFH+ + H FQVL H YL + +L G E A
Sbjct: 150 LFHYFYIHIFQVL------HLYLLASPTYIAMLAGNERA 182
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,483,270
Number of Sequences: 5004
Number of extensions: 51453
Number of successful extensions: 162
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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