Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_E14
(616 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0007 - 12074472-12074538,12074908-12075116,12077202-120774... 53 2e-07
01_03_0075 - 12218501-12218611,12219028-12219267,12219698-122198... 32 0.31
03_05_0871 + 28396964-28399843 31 0.96
06_01_0707 + 5136210-5136584 30 1.3
05_01_0064 + 454786-455646,456537-456752 30 1.3
03_05_0600 + 26021863-26022469,26022562-26022992 30 1.3
08_01_0321 + 2872609-2873027,2873477-2873905,2874743-2874944,287... 30 1.7
01_06_1226 - 35518981-35519295,35519876-35520745 30 1.7
11_06_0291 + 22008412-22012284 29 2.9
11_06_0289 - 21969248-21973516 29 3.9
11_06_0185 + 21018045-21022307 29 3.9
03_03_0265 - 16000085-16000319,16001730-16001854,16004323-16005492 29 3.9
01_07_0339 + 42848065-42848943,42849308-42849526 29 3.9
11_04_0311 + 16232961-16233079,16235135-16237080,16237246-16237370 28 5.1
12_02_0749 - 22758317-22760407 28 6.8
09_04_0350 + 16899076-16900164 28 6.8
05_03_0638 - 16489181-16489210,16489486-16489806,16489878-16489919 28 6.8
01_07_0056 - 40787723-40788124,40788236-40788430,40788914-40789309 28 6.8
04_04_0158 - 23187070-23187264,23187347-23187477,23187550-231877... 27 8.9
>11_04_0007 -
12074472-12074538,12074908-12075116,12077202-12077463,
12077547-12078043,12078651-12078719,12079258-12079363,
12080272-12080295,12081184-12081242,12081383-12081520
Length = 476
Score = 52.8 bits (121), Expect = 2e-07
Identities = 35/114 (30%), Positives = 55/114 (48%)
Frame = +2
Query: 200 GDLDAAYKYLXSAGSKLDYRRYGEVIFDVLIAGGLLLPGGSVSMDGESPKTNTCIFSANE 379
GDL+ K + S S L++ RYG+ F+V+ GG PG ++ + E + +
Sbjct: 107 GDLELVAKSIES--SDLNFSRYGDTFFEVVFIGGRTQPG-TIKPEEEGERHPYSVLDCAA 163
Query: 380 DMDTMRNFEQVFVKLMRRYKYLEKMFEQEMKKVLVYLKGFDPEQRIKLARMTAL 541
+ + K +RR +L K E M+K L L+ F+ +R KLA TAL
Sbjct: 164 QREAILPSVLYIQKTLRRRPFLIKNLENVMRKFLQSLEFFEENERKKLAIFTAL 217
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/31 (61%), Positives = 21/31 (67%)
Frame = +1
Query: 88 KPVLSGQRIKTRKRDXKEKYDPNGFRDALVQ 180
KP L GQRIKTRKR+ DP F DA+VQ
Sbjct: 70 KPTLGGQRIKTRKRNIAAPLDPASFSDAIVQ 100
>01_03_0075 -
12218501-12218611,12219028-12219267,12219698-12219815,
12219949-12220016,12220124-12220375,12221362-12221463,
12221734-12221802,12221892-12221987,12222161-12222208,
12222352-12222479,12222818-12222896,12223651-12223797,
12223956-12224022,12224655-12224830,12225588-12225755,
12225879-12225992,12226657-12226722,12227306-12227524,
12228142-12228321,12228481-12228584,12228998-12229277,
12230582-12231004
Length = 1084
Score = 32.3 bits (70), Expect = 0.31
Identities = 29/92 (31%), Positives = 39/92 (42%), Gaps = 1/92 (1%)
Frame = +2
Query: 101 RVNGSRPEKEMXKRSMTRTVSATLWYRALERAGGDLDAAYKYLXSAGSKLDYRRYGEVIF 280
RVN PE + R +A L RA RAG LD+ + + R G F
Sbjct: 103 RVNSMEPEVSALSDADLRARTAKLQERA--RAGESLDSLLPEAFAVVREASKRVLGLRPF 160
Query: 281 DVLIAGGLLLPGGSVS-MDGESPKTNTCIFSA 373
DV + GG++L G ++ M KT I A
Sbjct: 161 DVQLIGGMVLHKGEIAEMKTGEGKTLVAILPA 192
>03_05_0871 + 28396964-28399843
Length = 959
Score = 30.7 bits (66), Expect = 0.96
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 467 MKKVLVYLKGFDPEQRIKLARMTALWIGNGCVP 565
MK +YL F E I ++++ LWIG+ +P
Sbjct: 437 MKLCFMYLGAFKEETEISVSKLIKLWIGDDFIP 469
>06_01_0707 + 5136210-5136584
Length = 124
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = -3
Query: 257 GSRVLIRPSXGTCRLRRDRHRPAPEPCTRASRK 159
G RVL+ PS GT LRR RP P A R+
Sbjct: 70 GGRVLLSPS-GTSSLRRSHRRPPPPHSLGAQRR 101
>05_01_0064 + 454786-455646,456537-456752
Length = 358
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/83 (21%), Positives = 40/83 (48%)
Frame = +2
Query: 302 LLLPGGSVSMDGESPKTNTCIFSANEDMDTMRNFEQVFVKLMRRYKYLEKMFEQEMKKVL 481
L L GG+ G S + + + ED+ + ++F K + +Y+ FE+++++
Sbjct: 14 LCLCGGAACAAGRSGGEFSIVGYSEEDLASHDRLIELFEKWVAKYRKAYASFEEKVRRFE 73
Query: 482 VYLKGFDPEQRIKLARMTALWIG 550
V+ + I ++T+ W+G
Sbjct: 74 VFKDNLNHIDDIN-KKVTSYWLG 95
>03_05_0600 + 26021863-26022469,26022562-26022992
Length = 345
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -2
Query: 336 PSIDTEPPGSSRPPA 292
PS+D EPPG S PPA
Sbjct: 220 PSLDNEPPGGSTPPA 234
>08_01_0321 +
2872609-2873027,2873477-2873905,2874743-2874944,
2875909-2875947,2876309-2876354,2877380-2877922,
2878827-2880847,2880972-2881215,2881642-2881684,
2881923-2881962,2883580-2883675,2883712-2883759,
2883964-2884290
Length = 1498
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = +2
Query: 398 NFEQVFVKLMRRYKYLEKMFEQEMKKVLVYLKGFDPEQRIKLARMTALWIGNGCVP 565
N+E K + + Y + +K L+YL F + +I + +WI G VP
Sbjct: 676 NYEMANTKRILSFSYYD--LPSHLKNCLLYLSMFPEDYKIDKNHLIWIWIAEGFVP 729
>01_06_1226 - 35518981-35519295,35519876-35520745
Length = 394
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -3
Query: 428 ASVSRIPVRNFAWCPYPHWRRRCRCWSWAIRRPSTPNRPAAAGR 297
A +S P F P+ RR+ RC W + + P AAG+
Sbjct: 194 AMMSGCPEVGFGEAPFAEGRRKARCLMWVSKVAAGEAAPPAAGK 237
>11_06_0291 + 22008412-22012284
Length = 1290
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +2
Query: 386 DTMRNFEQVFVKLMRRYKYLEKMFEQEMKKVLVYLKGFDPEQRIKLARMTALWIGNG 556
D+ ++F+ + K M Y Y + +E K L+YL F Q+I+ + + W+ G
Sbjct: 794 DSQKSFDAI-AKNMLMYSYND--LPKEYKSCLLYLAIFPKGQKIRRSTLIGRWVTEG 847
>11_06_0289 - 21969248-21973516
Length = 1422
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 395 RNFEQVFVKLMRRYKYLEKMFEQEMKKVLVYLKGFDPEQRIKLARMTALWIGNG 556
++F+ + K M Y Y + +E K L+YL F Q+I+ + + A W+ G
Sbjct: 809 KSFDTI-AKKMFMYSYND--LPKEYKSCLLYLAIFPKGQKIRRSTLIARWVAEG 859
>11_06_0185 + 21018045-21022307
Length = 1420
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 395 RNFEQVFVKLMRRYKYLEKMFEQEMKKVLVYLKGFDPEQRIKLARMTALWIGNG 556
++F+ + K M Y Y + +E K L+YL F Q+I+ + + A W+ G
Sbjct: 807 KSFDTI-AKKMFMYSYND--LPKEYKSCLLYLAIFPKGQKIRRSTLIARWVAEG 857
>03_03_0265 - 16000085-16000319,16001730-16001854,16004323-16005492
Length = 509
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 171 SGTGLWSGPVAISTQPTSTXTRPD 242
S G W GPVA+S +P + PD
Sbjct: 186 SSRGSWEGPVALSRRPDAAALLPD 209
>01_07_0339 + 42848065-42848943,42849308-42849526
Length = 365
Score = 28.7 bits (61), Expect = 3.9
Identities = 19/86 (22%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Frame = +2
Query: 302 LLLPGGSVSMDGESPKTNTCIFSANEDMDTMRNFEQVFVKLMRRYKYLEKMFEQEMKKVL 481
LLL G + P + + + ED+ + ++F K M +Y+ E+++++
Sbjct: 15 LLLLCGGACVAVAMPSELSIVGYSEEDLASHERLMELFEKFMAKYRKAYSSLEEKLRRFE 74
Query: 482 VY---LKGFDPEQRIKLARMTALWIG 550
V+ L D E + ++T W+G
Sbjct: 75 VFKDNLNHIDEENK----KITGYWLG 96
>11_04_0311 + 16232961-16233079,16235135-16237080,16237246-16237370
Length = 729
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/47 (27%), Positives = 20/47 (42%)
Frame = +2
Query: 422 LMRRYKYLEKMFEQEMKKVLVYLKGFDPEQRIKLARMTALWIGNGCV 562
+ R Y ++K +YL F + RI R+T WI G +
Sbjct: 181 MTRILNYCYSSLPADLKTCSLYLSVFPKDSRISRKRLTRRWIAEGFI 227
>12_02_0749 - 22758317-22760407
Length = 696
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/19 (68%), Positives = 13/19 (68%)
Frame = -3
Query: 371 RRRCRCWSWAIRRPSTPNR 315
RRRCR S A RRP TP R
Sbjct: 14 RRRCRRLSGANRRPETPPR 32
>09_04_0350 + 16899076-16900164
Length = 362
Score = 27.9 bits (59), Expect = 6.8
Identities = 8/20 (40%), Positives = 10/20 (50%)
Frame = -3
Query: 404 RNFAWCPYPHWRRRCRCWSW 345
R W + WR+R CW W
Sbjct: 245 RRRTWRQHGEWRQRSGCWQW 264
>05_03_0638 - 16489181-16489210,16489486-16489806,16489878-16489919
Length = 130
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 253 LPTLWRSHIRCTHCWRPAAAGRF 321
LP + + C +C RP AAGRF
Sbjct: 89 LPAVAADLVDCMNCGRPVAAGRF 111
>01_07_0056 - 40787723-40788124,40788236-40788430,40788914-40789309
Length = 330
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -1
Query: 397 SHGVHILIGGEDAGVGLGRFAVHRHRTARQQQAASNEYIEYDFAIASVVE 248
+HG+H+++ DA GR A + R A + S E+ + D A+ VE
Sbjct: 69 THGLHVVLTSRDA--ARGRDATEQIRAAAGKPGVSVEWRQLDVTDAASVE 116
>04_04_0158 -
23187070-23187264,23187347-23187477,23187550-23187763,
23187834-23187932,23188034-23188156,23188247-23188366,
23188447-23188506,23188592-23188884,23189554-23189707,
23189813-23190130,23190668-23190798,23191001-23191586,
23192125-23192739
Length = 1012
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -2
Query: 603 SKCSFTRTSSTDGGTHPLPIHSAVMRAS-LMRCSGSK 496
S C TS++ TH P+ S+VM S R SGSK
Sbjct: 818 SSCLTESTSTSSESTHQSPLSSSVMHNSDSHRVSGSK 854
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,652,502
Number of Sequences: 37544
Number of extensions: 410057
Number of successful extensions: 1641
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1639
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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