Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_E14
(616 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25352| Best HMM Match : W2 (HMM E-Value=9.1e-20) 121 5e-28
SB_42832| Best HMM Match : ShTK (HMM E-Value=4.6e-07) 32 0.42
SB_23284| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_59343| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_18415| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_33131| Best HMM Match : DUF1168 (HMM E-Value=1.7e-06) 29 3.0
SB_53392| Best HMM Match : Thermopsin (HMM E-Value=0.49) 29 4.0
SB_16907| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_56651| Best HMM Match : DUF496 (HMM E-Value=8.5) 28 5.2
SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_48437| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_10566| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_9896| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_40530| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_39891| Best HMM Match : Seryl_tRNA_N (HMM E-Value=0.11) 28 5.2
SB_4026| Best HMM Match : MSSP (HMM E-Value=1.3) 28 6.9
SB_2798| Best HMM Match : DNA_pol_B_2 (HMM E-Value=7.9e-10) 28 6.9
SB_50258| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_41319| Best HMM Match : NACHT (HMM E-Value=5.2e-14) 27 9.1
SB_56937| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_4830| Best HMM Match : Rad10 (HMM E-Value=9.7) 27 9.1
>SB_25352| Best HMM Match : W2 (HMM E-Value=9.1e-20)
Length = 457
Score = 121 bits (291), Expect = 5e-28
Identities = 62/127 (48%), Positives = 83/127 (65%), Gaps = 3/127 (2%)
Frame = +2
Query: 185 LERAGGDLDAAYKYLXSAGSKLDYRRYGEVIFDVLIAGGLLLPGGSVSMDGESP---KTN 355
L G DL+ K+L ++G KL+YR YGE +FDVL A PGGS+ DG +P KTN
Sbjct: 22 LNDKGYDLEQVAKFLDTSGGKLNYRLYGEFLFDVLFAA----PGGSIVEDGPNPSTYKTN 77
Query: 356 TCIFSANEDMDTMRNFEQVFVKLMRRYKYLEKMFEQEMKKVLVYLKGFDPEQRIKLARMT 535
CIF AN D +T+R Q+ KL+ RY+YL+K +E EM K+L++LKGF E+R KLA T
Sbjct: 78 ICIFEANNDNETLRKHVQMHNKLICRYRYLQKSYEDEMNKILLFLKGFTDEEREKLAFTT 137
Query: 536 ALWIGNG 556
+ + NG
Sbjct: 138 GVVLANG 144
>SB_42832| Best HMM Match : ShTK (HMM E-Value=4.6e-07)
Length = 500
Score = 31.9 bits (69), Expect = 0.42
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -3
Query: 566 EARIRYRSTVQSCAPA*CAVRDRSLSSRPEPFSFPVRTFFPSTCT---DASVSRIPVRNF 396
E R + + S P C + RS+S P+P+ +P+ T +P T +VS+ VR +
Sbjct: 156 EGYCRTDAEINSRCPYSCR-KYRSVSPAPQPYPYPIGTLYPYQPTPVPGVTVSQPKVRGW 214
Query: 395 AW 390
W
Sbjct: 215 QW 216
>SB_23284| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 123
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 244 KTRLPTLWRSHIRCTHCWRPAAAG 315
+ RLP WRS R H W+P+ G
Sbjct: 19 RDRLPFQWRSRARRNHGWKPSLKG 42
>SB_59343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 864
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -1
Query: 463 LFEHFFQVLVPTHQFHEYLFEISHGVHILIGGEDAG 356
+F H VPT QF++Y EIS + I +GG G
Sbjct: 140 VFAHIISTEVPTVQFNQYWVEISDAL-ISLGGVSQG 174
>SB_18415| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 623
Score = 29.5 bits (63), Expect = 2.3
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Frame = -2
Query: 471 FISCSNIFSKYLYRRISFTNTCSKFRMV--SISSLAEKMQVLVLGD---SPSIDTEPPGS 307
++ C + + R S TN CS F ++ SI++ K+ V +P + T PP
Sbjct: 362 YVECCDCCKLGIKARFSNTN-CSTFNILFSSITNPCAKVFVECCNGVTPAPPLGTLPPPG 420
Query: 306 SRPPAMSTS 280
+RPP STS
Sbjct: 421 TRPPPPSTS 429
>SB_33131| Best HMM Match : DUF1168 (HMM E-Value=1.7e-06)
Length = 114
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -1
Query: 370 GEDAGVGLGRFAVHRHRTARQQQAASNEYIEYDFAIASVV 251
G AG G G F H +R R+++ EYIE ASV+
Sbjct: 69 GSSAGAGSGEF--HVYRATRRREYNRQEYIEKKSKEASVI 106
>SB_53392| Best HMM Match : Thermopsin (HMM E-Value=0.49)
Length = 750
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +2
Query: 200 GDLDAAYKYLXSAGSKLDYRRYGEVIFDVLIAGGLLLPGG 319
G +KY SAG+ DY Y V DV++ + L G
Sbjct: 486 GTTKLTFKYRLSAGTNADYSVYALVFIDVVVKYNVRLTRG 525
>SB_16907| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 886
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -2
Query: 348 LGDSPSIDTEPPGSSRPPAMSTSNMTSP*RR*SSFDPA 235
L D+P+ + PP S+ P A ST M+S F PA
Sbjct: 162 LWDAPTPTSAPPASAPPKAQSTQGMSSGTSEQPWFSPA 199
>SB_56651| Best HMM Match : DUF496 (HMM E-Value=8.5)
Length = 114
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -1
Query: 463 LFEHFFQVLVPTHQFHEYLFEISHGVHILIGGEDAG 356
+F H VPT QF++Y EIS + I +GG G
Sbjct: 11 VFAHIKSTEVPTVQFNQYWVEISDAL-ISLGGVSQG 45
>SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2480
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -1
Query: 463 LFEHFFQVLVPTHQFHEYLFEISHGVHILIGGEDAG 356
+F H VPT QF++Y EIS + I +GG G
Sbjct: 1227 VFAHIKSTEVPTVQFNQYWVEISDAL-ISLGGVSQG 1261
>SB_48437| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4247
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +2
Query: 368 SANEDMDTMRNFEQVFVKLMRRYKYLEKMFEQEMKKVLVY 487
S N DMD + Q KL + K LEK +QE++++ V+
Sbjct: 1496 SQNPDMDLLAQHYQQLAKLQKHKKELEK-HKQELEELAVW 1534
>SB_10566| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1264
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -1
Query: 463 LFEHFFQVLVPTHQFHEYLFEISHGVHILIGGEDAG 356
+F H VPT QF++Y EIS + I +GG G
Sbjct: 133 VFAHIKSTEVPTVQFNQYWVEISDAL-ISLGGVSQG 167
>SB_9896| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 393
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = -2
Query: 420 FTNTCSKFRMVSISSLAEKMQVLVLGDSPSIDTEPPGSSRPPA 292
+ + S+ R +++++ ++QV PSI ++PP PPA
Sbjct: 127 YQRSTSQDRHIAMTTRKAQVQVSASSSGPSIASQPPQPPAPPA 169
>SB_40530| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1033
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -1
Query: 463 LFEHFFQVLVPTHQFHEYLFEISHGVHILIGGEDAG 356
+F H VPT QF++Y EIS + I +GG G
Sbjct: 131 VFAHIKSTEVPTVQFNQYWVEISDAL-ISLGGVSQG 165
>SB_39891| Best HMM Match : Seryl_tRNA_N (HMM E-Value=0.11)
Length = 285
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -1
Query: 463 LFEHFFQVLVPTHQFHEYLFEISHGVHILIGGEDAG 356
+F H VPT QF++Y EIS + I +GG G
Sbjct: 133 VFAHIKSTEVPTVQFNQYWVEISDAL-ISLGGVSQG 167
>SB_4026| Best HMM Match : MSSP (HMM E-Value=1.3)
Length = 109
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +2
Query: 377 EDMDTMRNFEQVFVKLMRRYKYLEKMFEQEMKKV 478
+DM MR Q++ K MRR + L +M ++M+++
Sbjct: 68 KDMRRMRGLHQMWAKDMRRMRSLPQMRAKDMRRM 101
>SB_2798| Best HMM Match : DNA_pol_B_2 (HMM E-Value=7.9e-10)
Length = 1378
Score = 27.9 bits (59), Expect = 6.9
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
Frame = +1
Query: 313 GRFGVDGRRIAQDQH-----LHLLRQ*GYGHHAKFRTGIRETDASVQV-LGKNVRTGNEK 474
G GV +R +D + ++ LRQ K RT + D V + L N+ E
Sbjct: 92 GSGGVKRKRDPEDDNGKEDVVYELRQTSTKRSTKMRTDCTDYDLKVDLPLRDNLEEALED 151
Query: 475 GSGLLERLRSRTAHQAGAHD 534
G+L+R+ T H HD
Sbjct: 152 VEGVLDRVLDDTLHGVQEHD 171
>SB_50258| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 795
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 336 PSIDTEPPGSSRPPAMSTSNMTSP*R 259
P D PP S PP +S S+ ++P R
Sbjct: 733 PPPDESPPSSKHPPTVSPSSSSAPPR 758
>SB_41319| Best HMM Match : NACHT (HMM E-Value=5.2e-14)
Length = 961
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -1
Query: 463 LFEHFFQVLVPTHQFHEYLFEISHGVHILIGGEDAG 356
+F H VPT QF++Y EIS + I +GG G
Sbjct: 293 VFAHIKSTEVPTVQFNQYWKEISDAL-ISLGGVSQG 327
>SB_56937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 761
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +2
Query: 167 TLWYRALERAGGDLDAAYKYLXS-AGSKLDYR 259
TLW+ A+E DL+ A KY+ S GS L R
Sbjct: 409 TLWFEAMEMNLEDLNKAQKYISSYPGSLLKTR 440
>SB_4830| Best HMM Match : Rad10 (HMM E-Value=9.7)
Length = 231
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -1
Query: 328 RHRTARQQQAASNEYIEYDFAIASVV 251
RHRT RQQ AS E + +FA +V
Sbjct: 36 RHRTKRQQNMASLEELSTNFAPPGIV 61
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,452,758
Number of Sequences: 59808
Number of extensions: 422396
Number of successful extensions: 1454
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1448
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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