Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_E13
(616 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar... 147 1e-36
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha... 146 2e-36
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 27 2.2
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 27 2.2
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 25 6.6
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 25 6.6
SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase ... 25 8.7
>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 189
Score = 147 bits (356), Expect = 1e-36
Identities = 72/128 (56%), Positives = 89/128 (69%)
Frame = +1
Query: 211 WFGSKKELAAVRTVCSHVXNMIKGVTKGFQYXMRAVYAHFPINCVTTEGNSIIXIRNFLG 390
W GS+K A +RT S + NMI GVT+GF+Y MR VYAHFPIN TE +++ IRNFLG
Sbjct: 58 WHGSRKHNACIRTAYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLG 117
Query: 391 XKYITRVKMAPGVTVVNSPKQKDELIIEGNSLEHVSSSAALIQQSTTVNNXDITKFLDGL 570
+ +K PGVTV S KDE+IIEGNSLE+VS SAA I+Q V N DI KFLDG+
Sbjct: 118 ERITRVIKCLPGVTVSISSAVKDEIIIEGNSLENVSQSAANIKQICNVRNKDIRKFLDGI 177
Query: 571 YVSDKTTV 594
YVS++ +
Sbjct: 178 YVSERGNI 185
Score = 51.2 bits (117), Expect = 1e-07
Identities = 20/45 (44%), Positives = 35/45 (77%)
Frame = +2
Query: 41 KQIVANXKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIR 175
+ I + + IP+G++V +K+RLVTVKGPRGVLK+N + + ++++
Sbjct: 3 RDIYKDETLTIPEGVSVDIKARLVTVKGPRGVLKQNLRRVDIELK 47
>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 146 bits (354), Expect = 2e-36
Identities = 71/128 (55%), Positives = 90/128 (70%)
Frame = +1
Query: 211 WFGSKKELAAVRTVCSHVXNMIKGVTKGFQYXMRAVYAHFPINCVTTEGNSIIXIRNFLG 390
W GS+K A +R+V S + NMI GVT+GF+Y MR VYAHFPIN TE +++ IRNFLG
Sbjct: 58 WHGSRKHNACIRSVYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLG 117
Query: 391 XKYITRVKMAPGVTVVNSPKQKDELIIEGNSLEHVSSSAALIQQSTTVNNXDITKFLDGL 570
+ +K PGVTV S KDE+I+EGNSLE+VS SAA I+Q V N DI KFLDG+
Sbjct: 118 ERITRVIKCLPGVTVSISSAVKDEIILEGNSLENVSQSAANIKQICNVRNKDIRKFLDGI 177
Query: 571 YVSDKTTV 594
YVS++ +
Sbjct: 178 YVSERGNI 185
Score = 47.6 bits (108), Expect = 1e-06
Identities = 19/45 (42%), Positives = 32/45 (71%)
Frame = +2
Query: 41 KQIVANXKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIR 175
+ I + + IP G+TV +K+R VTV GPRG LK+N +H+ ++++
Sbjct: 3 RDIYKDETLTIPKGVTVDIKARNVTVTGPRGTLKQNLRHVDIEMK 47
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 27.1 bits (57), Expect = 2.2
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +1
Query: 430 TVVNSPKQKDELIIEGNSLEHVSSSAALIQQSTTVNN 540
+V+N K EL +EG L+ V ++ ++ T+ N+
Sbjct: 1228 SVINQESGKIELFMEGTGLQAVMNTEGIVGTKTSTNH 1264
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 27.1 bits (57), Expect = 2.2
Identities = 11/29 (37%), Positives = 21/29 (72%)
Frame = +1
Query: 439 NSPKQKDELIIEGNSLEHVSSSAALIQQS 525
+SPK+K +L ++G L+ + + +LI+QS
Sbjct: 249 SSPKEKYQLFMKGIQLKQLEENYSLIEQS 277
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.4 bits (53), Expect = 6.6
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 10 RLLCQTKPKHEANCSKSXSQNPRRAYGPCEIASGDS 117
RLL P + ++ +K+ + +PR AY C+ DS
Sbjct: 1466 RLLFLHSPGYLSDIAKTCNNDPRFAYEICKTLDNDS 1501
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 25.4 bits (53), Expect = 6.6
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -3
Query: 299 WKPLVTPLIMX-STCEQTVLTAASSFLDPNHFSTLQESEGLPCECQ 165
W P V M + L A +LD +++ST++ + GL EC+
Sbjct: 239 WAPYVAGANMDENNITYVKLGANPIYLDDSYWSTVKPTYGLALECE 284
>SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 231
Score = 25.0 bits (52), Expect = 8.7
Identities = 10/36 (27%), Positives = 23/36 (63%)
Frame = +1
Query: 484 LEHVSSSAALIQQSTTVNNXDITKFLDGLYVSDKTT 591
+ +S+SA + T +NN ++ K +GL+++ +T+
Sbjct: 78 MSDISNSACRASKITALNNRELYKDDNGLFITVQTS 113
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,434,973
Number of Sequences: 5004
Number of extensions: 47043
Number of successful extensions: 111
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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