Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_E13
         (616 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044    165   2e-41
02_01_0029 - 176002-176137,176495-176646,177166-177577,178010-17...   165   2e-41
03_02_0067 + 5364713-5364936,5365513-5367016,5367207-5368250,536...    30   1.7  

>09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044
          Length = 190

 Score =  165 bits (401), Expect = 2e-41
 Identities = 76/132 (57%), Positives = 97/132 (73%)
 Frame = +1

Query: 199 KVEKWFGSKKELAAVRTVCSHVXNMIKGVTKGFQYXMRAVYAHFPINCVTTEGNSIIXIR 378
           +V+ WFG+++ +AA+RT  SHV N+I GVTKG++Y MR VYAHFPIN   T  N+ I IR
Sbjct: 55  QVDAWFGTRRTMAAIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIR 114

Query: 379 NFLGXKYITRVKMAPGVTVVNSPKQKDELIIEGNSLEHVSSSAALIQQSTTVNNXDITKF 558
           NFLG K + +V M  GVT++ S K KDEL+++GN +E VS SAALI Q   V N DI KF
Sbjct: 115 NFLGEKKVRKVDMLEGVTILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKF 174

Query: 559 LDGLYVSDKTTV 594
           LDG+YVSDK T+
Sbjct: 175 LDGIYVSDKGTI 186



 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 25/48 (52%), Positives = 39/48 (81%)
 Frame = +2

Query: 38  MKQIVANXKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV 181
           MK I+A+  ++IP+G+TV V +++VTV+GPRG L RNFKHL +D +++
Sbjct: 1   MKTILASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLL 48


>02_01_0029 -
           176002-176137,176495-176646,177166-177577,178010-178126,
           178260-178322,178964-179167,180605-180687,182394-182516,
           182987-183328
          Length = 543

 Score =  165 bits (401), Expect = 2e-41
 Identities = 76/132 (57%), Positives = 97/132 (73%)
 Frame = +1

Query: 199 KVEKWFGSKKELAAVRTVCSHVXNMIKGVTKGFQYXMRAVYAHFPINCVTTEGNSIIXIR 378
           +V+ WFG+++ +AA+RT  SHV N+I GVTKG++Y MR VYAHFPIN   T  N+ I IR
Sbjct: 48  QVDAWFGTRRTMAAIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIR 107

Query: 379 NFLGXKYITRVKMAPGVTVVNSPKQKDELIIEGNSLEHVSSSAALIQQSTTVNNXDITKF 558
           NFLG K + +V M  GVT++ S K KDEL+++GN +E VS SAALI Q   V N DI KF
Sbjct: 108 NFLGEKKVRKVDMLEGVTILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKF 167

Query: 559 LDGLYVSDKTTV 594
           LDG+YVSDK T+
Sbjct: 168 LDGIYVSDKGTI 179



 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 23/48 (47%), Positives = 36/48 (75%)
 Frame = +2

Query: 65  VKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRSPARLR 208
           ++IP G+TVHV +++VTV+GPRG L RNFKHL +D +++      +L+
Sbjct: 1   MEIPSGVTVHVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEVEGVRKLQ 48


>03_02_0067 + 5364713-5364936,5365513-5367016,5367207-5368250,
            5368467-5368577,5368997-5369068,5369719-5369737,
            5369838-5371142,5371317-5371397,5372441-5372604,
            5373363-5373466,5373537-5373628,5374079-5374216,
            5374370-5374426,5374820-5375046
          Length = 1713

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
 Frame = +1

Query: 439  NSPKQKDEL--IIEGNSLEHVSSSAALIQQSTT 531
            ++PK  D+   I+E ++LEHV   A L+++STT
Sbjct: 1078 STPKHDDQAFSILENSALEHVKIMAELLEKSTT 1110


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,185,231
Number of Sequences: 37544
Number of extensions: 317381
Number of successful extensions: 673
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)