Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_E13
         (616 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal pro...   180   1e-45
U53147-5|AAA96116.1|  153|Caenorhabditis elegans Hypothetical pr...    31   0.49 
Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical ...    27   8.1  

>AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 9 protein.
          Length = 189

 Score =  180 bits (437), Expect = 1e-45
 Identities = 85/143 (59%), Positives = 105/143 (73%)
 Frame = +1

Query: 178 GKPSLSCKVEKWFGSKKELAAVRTVCSHVXNMIKGVTKGFQYXMRAVYAHFPINCVTTEG 357
           GK +L  +V KWFG +KELAA+RTVCSH+ NMIKGVT GF+Y MR+VYAHFPIN    +G
Sbjct: 49  GKSTL--RVRKWFGVRKELAAIRTVCSHIKNMIKGVTVGFRYKMRSVYAHFPINVTLQDG 106

Query: 358 NSIIXIRNFLGXKYITRVKMAPGVTVVNSPKQKDELIIEGNSLEHVSSSAALIQQSTTVN 537
           N  + IRNFLG K + RV +  GV    S  QKDE+++EGN ++ VS +AA IQQST V 
Sbjct: 107 NRTVEIRNFLGEKIVRRVPLPEGVIATISTAQKDEIVVEGNDVQFVSQAAARIQQSTAVK 166

Query: 538 NXDITKFLDGLYVSDKTTVVLHD 606
             DI KFLDG+YVS+KTT+V  D
Sbjct: 167 EKDIRKFLDGIYVSEKTTIVPTD 189



 Score = 51.2 bits (117), Expect = 6e-07
 Identities = 24/66 (36%), Positives = 42/66 (63%)
 Frame = +2

Query: 38  MKQIVANXKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRSPARLRNGS 217
           MK I +N  V  P+G+T  VK+R+V V GPRG ++++F+HL +++  +  +S  R+R   
Sbjct: 1   MKLIESNDTVVFPEGVTFTVKNRIVHVTGPRGTIRKDFRHLHMEMERIG-KSTLRVRKWF 59

Query: 218 DPKRSL 235
             ++ L
Sbjct: 60  GVRKEL 65


>U53147-5|AAA96116.1|  153|Caenorhabditis elegans Hypothetical
           protein C01B7.5 protein.
          Length = 153

 Score = 31.5 bits (68), Expect = 0.49
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 220 IRTISQPCRRARVYHANVNSQVFKVPFENSAGPFNC 113
           + T  Q C R ++    V  +  ++P EN A  FNC
Sbjct: 89  VTTYIQECIRRKIIQLKVRRRALEIPAENEASVFNC 124


>Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical
           protein M110.4b protein.
          Length = 1155

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -1

Query: 166 NSQVFKVPFENSAGPFNCHQTRFHMDR 86
           +SQ F +PF N++GP N +  R  M++
Sbjct: 26  SSQQFVMPFVNTSGPVNSNYQRMPMNQ 52


>Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical
           protein M110.4a protein.
          Length = 1156

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -1

Query: 166 NSQVFKVPFENSAGPFNCHQTRFHMDR 86
           +SQ F +PF N++GP N +  R  M++
Sbjct: 26  SSQQFVMPFVNTSGPVNSNYQRMPMNQ 52


>AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical
            protein D1007.15 protein.
          Length = 1184

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/46 (21%), Positives = 24/46 (52%)
 Frame = +1

Query: 283  VTKGFQYXMRAVYAHFPINCVTTEGNSIIXIRNFLGXKYITRVKMA 420
            ++  F Y + +++  FPI C+  +   I+ +   +G  Y+  V ++
Sbjct: 1085 LSSSFVYGLSSLWYEFPIKCLLWDAAVIVCLITQIGYSYLRGVHLS 1130


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,827,810
Number of Sequences: 27780
Number of extensions: 277688
Number of successful extensions: 599
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)