Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_E12
         (649 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    23   2.2  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   6.6  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    21   8.7  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    21   8.7  

>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 13/52 (25%), Positives = 27/52 (51%)
 Frame = +3

Query: 438 IFKHAMQKIQIKRKECTLDKELLELTGNVLSSNPDIYTLWNIXREILQLFKK 593
           I+   + ++  K KE  +DK  L     ++  NPD+  + ++ +E+  L +K
Sbjct: 291 IYDRVLSELVNKMKEMKMDKTELGCLRAIILYNPDVRGIKSV-QEVEMLREK 341


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 14/52 (26%), Positives = 22/52 (42%)
 Frame = -2

Query: 600 HCFF*IIVKFLSLYSIKCKCQD*KIIHFLSVPVILYQECILFS*FEFFAWHV 445
           H  F     F +++ +   C D   +H L +P I Y     +S F  F  H+
Sbjct: 179 HLLFCCAFIFFNMHLLFLLCLDYFTLHLLFLPCIYY----FYSAFIIFTIHL 226


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +1

Query: 475 EKNALLIKNYW 507
           EKN LLI N W
Sbjct: 45  EKNQLLITNIW 55


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +1

Query: 475 EKNALLIKNYW 507
           EKN LLI N W
Sbjct: 45  EKNQLLITNIW 55


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,656
Number of Sequences: 336
Number of extensions: 2168
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)