Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_E12
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyce...    51   1e-07
SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p...    28   1.0  
SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit C...    27   1.8  
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...    26   4.1  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    26   5.4  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    25   7.1  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   9.4  
SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease |Schizosacc...    25   9.4  

>SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 51.2 bits (117), Expect = 1e-07
 Identities = 25/73 (34%), Positives = 41/73 (56%)
 Frame = +3

Query: 360 MHGRVKVXTSEEXKARKEKXXNEKLKIFKHAMQKIQIKRKECTLDKELLELTGNVLSSNP 539
           MHG ++V  SEE +  K +    K++ ++  + + Q  RK     +  L+LT  +L  NP
Sbjct: 1   MHGILRVKLSEEQRKLKAEKERAKIEEYRGLVSRFQEARKRKDYSEGNLKLTTELLDWNP 60

Query: 540 DIYTLWNIXREIL 578
           + Y++WN  REIL
Sbjct: 61  ETYSVWNYRREIL 73


>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 521

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +3

Query: 363 HGRVKVXTSEEXKARKEKXXNEKLKIFKHAMQKIQIKRK 479
           +GR K  T EE +ARK+K   +K +  K  + K + KRK
Sbjct: 476 NGRAK-ETPEEKRARKKKTKEDKAEKRKSKIPKYEKKRK 513


>SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit
           Cwp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +3

Query: 474 RKECTLDKELLELTGNVLSSNPDIYTLWNIXREILQLFKKSNDN-IEXMSQV 626
           +KE +L    L LTG ++ +NP  YT+W    +IL       DN +E + ++
Sbjct: 54  KKEYSL--RALNLTGFLIMNNPAHYTVWAYRFQILNHTPSYIDNELEWLDEI 103


>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
           Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 16/69 (23%), Positives = 31/69 (44%)
 Frame = +3

Query: 435 KIFKHAMQKIQIKRKECTLDKELLELTGNVLSSNPDIYTLWNIXREILQLFKKSNDNIEX 614
           +I K+ +  + + +    L  E++   GN+ +  P +  L  I +EIL+L        E 
Sbjct: 710 QIAKNYVDMLGLYKAVSGLISEVVAAQGNIATKTPHVRGLRTIKKEILKLVDAYISRAED 769

Query: 615 MSQVYNAXL 641
           +  V N  +
Sbjct: 770 LELVGNTLI 778


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1154

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 274  IYFVPITEQIYIENHSV*ILSS*NSTKQRCT 366
            I+F P TE +YI ++++ +  S  S KQ  T
Sbjct: 1087 IFFEPNTENVYINSYNLWVDQSSQSKKQNRT 1117


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/33 (30%), Positives = 22/33 (66%)
 Frame = +3

Query: 438 IFKHAMQKIQIKRKECTLDKELLELTGNVLSSN 536
           +F+H  +K+++++KE     E+L++   +L SN
Sbjct: 571 LFQHVDEKLRLEKKEQLSYLEILKVIEQMLESN 603


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 520  MYYLLILTFTLYGI*XEKFYNYLKKAM 600
            MYY L   F+L G      ++Y+K AM
Sbjct: 1125 MYYFLPTVFSLSGSYWNSIFDYIKYAM 1151


>SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 498 ELLELTGNVLSSNPDIYT 551
           EL E+  N + SNPDIY+
Sbjct: 161 ELREIVANQVLSNPDIYS 178


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,012,530
Number of Sequences: 5004
Number of extensions: 33359
Number of successful extensions: 72
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)