Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_E12
         (649 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y08200-1|CAA69382.1|  567|Homo sapiens rab geranylgeranyl transf...    77   5e-14
BC003093-1|AAH03093.1|  567|Homo sapiens Rab geranylgeranyltrans...    77   5e-14
CR541797-1|CAG46596.1|  567|Homo sapiens RABGGTA protein.              74   4e-13
BC053622-1|AAH53622.1|  403|Homo sapiens PTAR1 protein protein.        33   1.2  
AL162412-2|CAI10945.2|  312|Homo sapiens protein prenyltransfera...    33   1.2  
X99717-1|CAA68053.1|  754|Homo sapiens SRcyp protein protein.          30   6.2  
U40763-1|AAB40347.1|  754|Homo sapiens CARS-Cyp protein.               30   6.2  
BC111693-1|AAI11694.1|  739|Homo sapiens PPIG protein protein.         30   6.2  
AL096857-1|CAB51071.1| 2701|Homo sapiens hypothetical protein pr...    30   6.2  
AF488829-1|AAO49478.1| 2701|Homo sapiens HBxAg transactivated pr...    30   6.2  
AC016772-2|AAY24233.1|  571|Homo sapiens unknown protein.              30   6.2  

>Y08200-1|CAA69382.1|  567|Homo sapiens rab geranylgeranyl
           transferase protein.
          Length = 567

 Score = 77.0 bits (181), Expect = 5e-14
 Identities = 36/74 (48%), Positives = 48/74 (64%)
 Frame = +3

Query: 360 MHGRVKVXTSEEXKARKEKXXNEKLKIFKHAMQKIQIKRKECTLDKELLELTGNVLSSNP 539
           MHGR+KV TSEE    K     +KLK+++ A Q +  KR+   LD+ +LELT  +L +NP
Sbjct: 1   MHGRLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANP 60

Query: 540 DIYTLWNIXREILQ 581
           D  TLWN  RE+LQ
Sbjct: 61  DFATLWNCRREVLQ 74


>BC003093-1|AAH03093.1|  567|Homo sapiens Rab
           geranylgeranyltransferase, alpha subunit protein.
          Length = 567

 Score = 77.0 bits (181), Expect = 5e-14
 Identities = 36/74 (48%), Positives = 48/74 (64%)
 Frame = +3

Query: 360 MHGRVKVXTSEEXKARKEKXXNEKLKIFKHAMQKIQIKRKECTLDKELLELTGNVLSSNP 539
           MHGR+KV TSEE    K     +KLK+++ A Q +  KR+   LD+ +LELT  +L +NP
Sbjct: 1   MHGRLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANP 60

Query: 540 DIYTLWNIXREILQ 581
           D  TLWN  RE+LQ
Sbjct: 61  DFATLWNCRREVLQ 74


>CR541797-1|CAG46596.1|  567|Homo sapiens RABGGTA protein.
          Length = 567

 Score = 74.1 bits (174), Expect = 4e-13
 Identities = 35/74 (47%), Positives = 47/74 (63%)
 Frame = +3

Query: 360 MHGRVKVXTSEEXKARKEKXXNEKLKIFKHAMQKIQIKRKECTLDKELLELTGNVLSSNP 539
           MHGR+KV TSE     K     +KLK+++ A Q +  KR+   LD+ +LELT  +L +NP
Sbjct: 1   MHGRLKVKTSEVQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANP 60

Query: 540 DIYTLWNIXREILQ 581
           D  TLWN  RE+LQ
Sbjct: 61  DFATLWNCRREVLQ 74


>BC053622-1|AAH53622.1|  403|Homo sapiens PTAR1 protein protein.
          Length = 403

 Score = 32.7 bits (71), Expect = 1.2
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 474 RKECTLDKELLELTGNVLSSNPDIYTLWNIXREIL 578
           RK+     EL+++T  +L  NPD  T WN+ +E++
Sbjct: 79  RKQWLNRDELIDVTCTLLLLNPDFTTAWNVRKELI 113


>AL162412-2|CAI10945.2|  312|Homo sapiens protein prenyltransferase
           alpha subunit repeat containing 1 protein.
          Length = 312

 Score = 32.7 bits (71), Expect = 1.2
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 474 RKECTLDKELLELTGNVLSSNPDIYTLWNIXREIL 578
           RK+     EL+++T  +L  NPD  T WN+ +E++
Sbjct: 78  RKQWLNRDELIDVTCTLLLLNPDFTTAWNVRKELI 112


>X99717-1|CAA68053.1|  754|Homo sapiens SRcyp protein protein.
          Length = 754

 Score = 30.3 bits (65), Expect = 6.2
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +2

Query: 356 RDARESESXNF*GXESQERERXK*KIEDFQTCHAK-NSNQEKRMHS 490
           RD+R SE       ESQ R + K + ++ ++ H K NS  EKRM+S
Sbjct: 626 RDSRSSERE-----ESQSRNKDKYRNQESKSSHRKENSESEKRMYS 666


>U40763-1|AAB40347.1|  754|Homo sapiens CARS-Cyp protein.
          Length = 754

 Score = 30.3 bits (65), Expect = 6.2
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +2

Query: 356 RDARESESXNF*GXESQERERXK*KIEDFQTCHAK-NSNQEKRMHS 490
           RD+R SE       ESQ R + K + ++ ++ H K NS  EKRM+S
Sbjct: 626 RDSRSSERE-----ESQSRNKDKYRNQESKSSHRKENSESEKRMYS 666


>BC111693-1|AAI11694.1|  739|Homo sapiens PPIG protein protein.
          Length = 739

 Score = 30.3 bits (65), Expect = 6.2
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +2

Query: 356 RDARESESXNF*GXESQERERXK*KIEDFQTCHAK-NSNQEKRMHS 490
           RD+R SE       ESQ R + K + ++ ++ H K NS  EKRM+S
Sbjct: 611 RDSRSSERE-----ESQSRNKDKYRNQESKSSHRKENSESEKRMYS 651


>AL096857-1|CAB51071.1| 2701|Homo sapiens hypothetical protein
           protein.
          Length = 2701

 Score = 30.3 bits (65), Expect = 6.2
 Identities = 17/52 (32%), Positives = 29/52 (55%)
 Frame = +3

Query: 390 EEXKARKEKXXNEKLKIFKHAMQKIQIKRKECTLDKELLELTGNVLSSNPDI 545
           +E K  KEK   E+ K  +  +QK++ + KEC L+KE  +L   +    P++
Sbjct: 557 KERKQEKEKEL-ERQKEKEKELQKMKEQEKECELEKEREKLEEKIEPREPNL 607


>AF488829-1|AAO49478.1| 2701|Homo sapiens HBxAg transactivated
           protein 2 protein.
          Length = 2701

 Score = 30.3 bits (65), Expect = 6.2
 Identities = 17/52 (32%), Positives = 29/52 (55%)
 Frame = +3

Query: 390 EEXKARKEKXXNEKLKIFKHAMQKIQIKRKECTLDKELLELTGNVLSSNPDI 545
           +E K  KEK   E+ K  +  +QK++ + KEC L+KE  +L   +    P++
Sbjct: 557 KERKQEKEKEL-ERQKEKEKELQKMKEQEKECELEKEREKLEEKIEPREPNL 607


>AC016772-2|AAY24233.1|  571|Homo sapiens unknown protein.
          Length = 571

 Score = 30.3 bits (65), Expect = 6.2
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +2

Query: 356 RDARESESXNF*GXESQERERXK*KIEDFQTCHAK-NSNQEKRMHS 490
           RD+R SE       ESQ R + K + ++ ++ H K NS  EKRM+S
Sbjct: 443 RDSRSSERE-----ESQSRNKDKYRNQESKSSHRKENSESEKRMYS 483


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,363,914
Number of Sequences: 237096
Number of extensions: 952046
Number of successful extensions: 5186
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5186
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7197658880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)