Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_E12
         (649 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100664-1|AAC68985.1|  580|Caenorhabditis elegans Hypothetical ...    71   7e-13
AF045641-4|AAO91715.1|  332|Caenorhabditis elegans Hypothetical ...    31   0.53 
AF045641-3|AAO91716.1|  368|Caenorhabditis elegans Hypothetical ...    31   0.53 
AF045641-2|AAC02578.2| 1370|Caenorhabditis elegans Hypothetical ...    31   0.53 
U61947-5|AAB03134.1|  723|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z32683-4|CAA83629.1|  443|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    27   8.7  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    27   8.7  

>AF100664-1|AAC68985.1|  580|Caenorhabditis elegans Hypothetical
           protein M57.2 protein.
          Length = 580

 Score = 70.9 bits (166), Expect = 7e-13
 Identities = 34/84 (40%), Positives = 50/84 (59%)
 Frame = +3

Query: 360 MHGRVKVXTSEEXKARKEKXXNEKLKIFKHAMQKIQIKRKECTLDKELLELTGNVLSSNP 539
           MH   KV T+EE KA K+K   ++ + F H   KI  KR++   D E+L LT  +L  N 
Sbjct: 1   MHFVKKVPTTEEEKAAKQKEHTKRSQQFLHVRDKIVAKREKGEYDDEILSLTQAILEKNA 60

Query: 540 DIYTLWNIXREILQLFKKSNDNIE 611
           DIYT WNI R  ++L  ++N+ ++
Sbjct: 61  DIYTFWNIRRTTIELRMEANEKVQ 84


>AF045641-4|AAO91715.1|  332|Caenorhabditis elegans Hypothetical
           protein F53H1.4b protein.
          Length = 332

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
 Frame = +3

Query: 375 KVXTSEEXKARKEKXXNEKLKIFKH-AMQKIQIKRKEC-TLDKELLELTGNVLSSNPDIY 548
           K    EE KA+K K   EKLK  +  A +K + K K   T+DK L + TG+  S N  ++
Sbjct: 225 KKQKKEEEKAKKLKEKEEKLKEKEEKAARKAEKKEKNNGTMDKFLKKDTGSPSSKNAPLF 284

Query: 549 T 551
           +
Sbjct: 285 S 285


>AF045641-3|AAO91716.1|  368|Caenorhabditis elegans Hypothetical
           protein F53H1.4c protein.
          Length = 368

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
 Frame = +3

Query: 375 KVXTSEEXKARKEKXXNEKLKIFKH-AMQKIQIKRKEC-TLDKELLELTGNVLSSNPDIY 548
           K    EE KA+K K   EKLK  +  A +K + K K   T+DK L + TG+  S N  ++
Sbjct: 261 KKQKKEEEKAKKLKEKEEKLKEKEEKAARKAEKKEKNNGTMDKFLKKDTGSPSSKNAPLF 320

Query: 549 T 551
           +
Sbjct: 321 S 321


>AF045641-2|AAC02578.2| 1370|Caenorhabditis elegans Hypothetical
           protein F53H1.4a protein.
          Length = 1370

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
 Frame = +3

Query: 375 KVXTSEEXKARKEKXXNEKLKIFKH-AMQKIQIKRKEC-TLDKELLELTGNVLSSNPDIY 548
           K    EE KA+K K   EKLK  +  A +K + K K   T+DK L + TG+  S N  ++
Sbjct: 261 KKQKKEEEKAKKLKEKEEKLKEKEEKAARKAEKKEKNNGTMDKFLKKDTGSPSSKNAPLF 320

Query: 549 T 551
           +
Sbjct: 321 S 321


>U61947-5|AAB03134.1|  723|Caenorhabditis elegans Hypothetical
           protein C06G3.4 protein.
          Length = 723

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 20/68 (29%), Positives = 33/68 (48%)
 Frame = +3

Query: 423 NEKLKIFKHAMQKIQIKRKECTLDKELLELTGNVLSSNPDIYTLWNIXREILQLFKKSND 602
           N+ LKI K A++++ I +KE  L + +L    N    N + +  W    +     KK N+
Sbjct: 155 NKPLKIGKEAIEELHISKKEMKLLRSMLSSNYNF---NGNFWKTWESEGK-----KKLNE 206

Query: 603 NIEXMSQV 626
            IE M  +
Sbjct: 207 TIEKMKHL 214


>Z32683-4|CAA83629.1|  443|Caenorhabditis elegans Hypothetical
           protein R07E5.6 protein.
          Length = 443

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
 Frame = +3

Query: 348 N*AEMHGRVKVXTSEEXKARKEKXXNEKLKIFKHAMQKIQIKRKECTLDKELLELTGN-- 521
           N  EM  ++K    E+ KA+KEK   +K +  K  +++ + K+KE   +K   E+  N  
Sbjct: 245 NKMEMTEKIK-KKDEDEKAKKEKERIDKEEKIKKEVEEAEKKKKE-EKEKRRKEVKKNRE 302

Query: 522 -VLSSNPDI 545
             LS NP++
Sbjct: 303 EQLSINPEM 311


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
             protein.
          Length = 18519

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = +3

Query: 387   SEEXKARKEKXXNEKLKIFKHAMQKIQIKRKECTLDKELLE 509
             SE+  ARKEK  N+KLK+      + +I  K+ + DK  LE
Sbjct: 13247 SEDDAARKEKELNDKLKL------ESEIATKKASADKLKLE 13281


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
             protein.
          Length = 18534

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = +3

Query: 387   SEEXKARKEKXXNEKLKIFKHAMQKIQIKRKECTLDKELLE 509
             SE+  ARKEK  N+KLK+      + +I  K+ + DK  LE
Sbjct: 13247 SEDDAARKEKELNDKLKL------ESEIATKKASADKLKLE 13281


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,027,119
Number of Sequences: 27780
Number of extensions: 183301
Number of successful extensions: 384
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)